Literature DB >> 27612647

Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling.

Oula Puonti1, Juan Eugenio Iglesias2, Koen Van Leemput3.   

Abstract

Quantitative analysis of magnetic resonance imaging (MRI) scans of the brain requires accurate automated segmentation of anatomical structures. A desirable feature for such segmentation methods is to be robust against changes in acquisition platform and imaging protocol. In this paper we validate the performance of a segmentation algorithm designed to meet these requirements, building upon generative parametric models previously used in tissue classification. The method is tested on four different datasets acquired with different scanners, field strengths and pulse sequences, demonstrating comparable accuracy to state-of-the-art methods on T1-weighted scans while being one to two orders of magnitude faster. The proposed algorithm is also shown to be robust against small training datasets, and readily handles images with different MRI contrast as well as multi-contrast data. Copyright Â
© 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Atlases; Bayesian modeling; MRI; Parametric models; Segmentation

Mesh:

Year:  2016        PMID: 27612647      PMCID: PMC8117726          DOI: 10.1016/j.neuroimage.2016.09.011

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  64 in total

1.  Sequence-independent segmentation of magnetic resonance images.

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2.  Anatomic segmentation and volumetric calculations in nuclear magnetic resonance imaging.

Authors:  D N Kennedy; P A Filipek; V R Caviness
Journal:  IEEE Trans Med Imaging       Date:  1989       Impact factor: 10.048

3.  An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

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4.  Cortical surface-based analysis. I. Segmentation and surface reconstruction.

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Authors:  Françcois Rousseau; Piotr A Habas; Colin Studholme
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Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
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8.  MRI-Based Topographic Parcellation of Human Neocortex: An Anatomically Specified Method with Estimate of Reliability.

Authors:  V S Caviness; J Meyer; N Makris; D N Kennedy
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9.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
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10.  Segmentation of MR images via discriminative dictionary learning and sparse coding: application to hippocampus labeling.

Authors:  Tong Tong; Robin Wolz; Pierrick Coupé; Joseph V Hajnal; Daniel Rueckert
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  21 in total

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2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

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3.  PSACNN: Pulse sequence adaptive fast whole brain segmentation.

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4.  Unsupervised Deep Learning for Bayesian Brain MRI Segmentation.

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Journal:  Med Image Anal       Date:  2019-03-22       Impact factor: 8.545

Review 6.  Review on Hybrid Segmentation Methods for Identification of Brain Tumor in MRI.

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7.  Partial-volume modeling reveals reduced gray matter in specific thalamic nuclei early in the time course of psychosis and chronic schizophrenia.

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Journal:  Hum Brain Mapp       Date:  2020-07-10       Impact factor: 5.038

8.  A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology.

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9.  Migraine with aura in women is not associated with structural thalamic abnormalities.

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10.  A multimodal computational pipeline for 3D histology of the human brain.

Authors:  Matteo Mancini; Adrià Casamitjana; Loic Peter; Eleanor Robinson; Shauna Crampsie; David L Thomas; Janice L Holton; Zane Jaunmuktane; Juan Eugenio Iglesias
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