Literature DB >> 27612318

Emerging roles and context of circular RNAs.

Amaresh C Panda1, Ioannis Grammatikakis1, Rachel Munk1, Myriam Gorospe1, Kotb Abdelmohsen1.   

Abstract

Circular RNAs (circRNAs) represent a large class of noncoding RNAs (ncRNAs) that have recently emerged as regulators of gene expression. They have been shown to suppress microRNAs, thereby increasing the translation and stability of the targets of such microRNAs. In this review, we discuss the emerging functions of circRNAs, including RNA transcription, splicing, turnover, and translation. We also discuss other possible facets of circRNAs that can influence their function depending on the cell context, such as circRNA abundance, subcellular localization, interacting partners (RNA, DNA, and proteins), dynamic changes in interactions following stimulation, and potential circRNA translation. The ensuing changes in gene expression patterns elicited by circRNAs are proposed to drive key cellular processes, such as cell proliferation, differentiation, and survival, that govern health and disease. WIREs RNA 2017, 8:e1386. doi: 10.1002/wrna.1386 For further resources related to this article, please visit the WIREs website. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

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Year:  2016        PMID: 27612318      PMCID: PMC5315638          DOI: 10.1002/wrna.1386

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  61 in total

1.  Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.

Authors:  Kerstin-Maike Schmitz; Christine Mayer; Anna Postepska; Ingrid Grummt
Journal:  Genes Dev       Date:  2010-10-15       Impact factor: 11.361

2.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

3.  Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Authors:  Agnieszka Rybak-Wolf; Christin Stottmeister; Petar Glažar; Marvin Jens; Natalia Pino; Sebastian Giusti; Mor Hanan; Mikaela Behm; Osnat Bartok; Reut Ashwal-Fluss; Margareta Herzog; Luisa Schreyer; Panagiotis Papavasileiou; Andranik Ivanov; Marie Öhman; Damian Refojo; Sebastian Kadener; Nikolaus Rajewsky
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

4.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

5.  5' UTR m(6)A Promotes Cap-Independent Translation.

Authors:  Kate D Meyer; Deepak P Patil; Jun Zhou; Alexandra Zinoviev; Maxim A Skabkin; Olivier Elemento; Tatyana V Pestova; Shu-Bing Qian; Samie R Jaffrey
Journal:  Cell       Date:  2015-10-22       Impact factor: 41.582

6.  The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation.

Authors:  Felipe C Beckedorff; Ana C Ayupe; Renan Crocci-Souza; Murilo S Amaral; Helder I Nakaya; Daniela T Soltys; Carlos F M Menck; Eduardo M Reis; Sergio Verjovski-Almeida
Journal:  PLoS Genet       Date:  2013-08-22       Impact factor: 5.917

Review 7.  Neighboring gene regulation by antisense long non-coding RNAs.

Authors:  Victoria E Villegas; Peter G Zaphiropoulos
Journal:  Int J Mol Sci       Date:  2015-02-03       Impact factor: 5.923

8.  Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.

Authors:  Qiupeng Zheng; Chunyang Bao; Weijie Guo; Shuyi Li; Jie Chen; Bing Chen; Yanting Luo; Dongbin Lyu; Yan Li; Guohai Shi; Linhui Liang; Jianren Gu; Xianghuo He; Shenglin Huang
Journal:  Nat Commun       Date:  2016-04-06       Impact factor: 14.919

9.  Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor.

Authors:  Yehoshua Enuka; Mattia Lauriola; Morris E Feldman; Aldema Sas-Chen; Igor Ulitsky; Yosef Yarden
Journal:  Nucleic Acids Res       Date:  2015-12-10       Impact factor: 16.971

10.  Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors:  Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2015-10-08       Impact factor: 11.361

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  55 in total

1.  Identifying intronic circRNAs: progress and challenges.

Authors:  Amaresh C Panda; Myriam Gorospe
Journal:  Noncoding RNA Investig       Date:  2018-06-14

Review 2.  SASP regulation by noncoding RNA.

Authors:  Amaresh C Panda; Kotb Abdelmohsen; Myriam Gorospe
Journal:  Mech Ageing Dev       Date:  2017-05-11       Impact factor: 5.432

Review 3.  Circular RNAs in myogenesis.

Authors:  Arundhati Das; Aniruddha Das; Debojyoti Das; Kotb Abdelmohsen; Amaresh C Panda
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-04-01       Impact factor: 4.490

4.  'RNA circles of influence' in Kaposi sarcoma.

Authors:  Dimitrios Tsitsipatis; Myriam Gorospe
Journal:  Ann Transl Med       Date:  2019-07

5.  CircPOMT1 and circMCM3AP inhibit osteogenic differentiation of human adipose-derived stem cells by targeting miR-6881-3p.

Authors:  Xin-Qi Huang; Xiao Cen; Wen-Tian Sun; Kai Xia; Li-Yuan Yu; Jun Liu; Zhi-He Zhao
Journal:  Am J Transl Res       Date:  2019-08-15       Impact factor: 4.060

6.  Circular RNA hsa_circ_0008344 regulates glioblastoma cell proliferation, migration, invasion, and apoptosis.

Authors:  Jinxu Zhou; Hongxiang Wang; Junsheng Chu; Qilin Huang; Guangxu Li; Yong Yan; Tao Xu; Juxiang Chen; Yuhai Wang
Journal:  J Clin Lab Anal       Date:  2018-04-24       Impact factor: 2.352

7.  Distinct mechanisms obviate the potentially toxic effects of inverted-repeat Alu elements on cellular RNA metabolism.

Authors:  Reyad A Elbarbary; Lynne E Maquat
Journal:  Nat Struct Mol Biol       Date:  2017-06-06       Impact factor: 15.369

8.  miR-192 Is Overexpressed and Promotes Cell Proliferation in Prostate Cancer.

Authors:  Zhong-Jun Chen; You-Ji Yan; Hao Shen; Jia-Jie Zhou; Guang-Hua Yang; Yi-Xiang Liao; Jin-Min Zeng; Tao Yang
Journal:  Med Princ Pract       Date:  2018-12-13       Impact factor: 1.927

9.  Identification and characterization of circular RNAs in the silkworm midgut following Bombyx mori cytoplasmic polyhedrosis virus infection.

Authors:  Xiaolong Hu; Min Zhu; Xing Zhang; Bo Liu; Zi Liang; Lixu Huang; Jian Xu; Lei Yu; Kun Li; Mian Sahib Zar; Renyu Xue; Guangli Cao; Chengliang Gong
Journal:  RNA Biol       Date:  2017-12-21       Impact factor: 4.652

10.  Detection and Analysis of Circular RNAs by RT-PCR.

Authors:  Amaresh C Panda; Myriam Gorospe
Journal:  Bio Protoc       Date:  2018-03-20
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