| Literature DB >> 27589775 |
Ping Rao1,2, Yong Zhou3, Si-Qi Ge4,5, An-Xin Wang6, Xin-Wei Yu7,8, Mohamed Ali Alzain9, Andrea Katherine Veronica10, Jing Qiu11, Man-Shu Song12, Jie Zhang13, Hao Wang14, Hong-Hong Fang15, Qing Gao16, You-Xin Wang17, Wei Wang18,19.
Abstract
BACKGROUND: More than 60 genetic susceptibility loci associated with type 2 diabetes mellitus (T2DM) have been established in populations of Asian and European ancestry. Given ethnic differences and environmental factors, validation of the effects of genetic risk variants with reported associations identified by Genome-Wide Association Studies (GWASs) is essential. The study aims at evaluating the associations of T2DM with 29 single nucleotide polymorphisms (SNPs) from 19 candidate genes derived from GWASs in a northern Han Chinese population.Entities:
Keywords: FAF1; Han Chinese; genetic risk score; genetic susceptibility; type 2 diabetes
Mesh:
Substances:
Year: 2016 PMID: 27589775 PMCID: PMC5036696 DOI: 10.3390/ijerph13090863
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Information of the selected type 2 diabetes mellitus (T2DM)-related single nucleotide polymorphisms (SNPs).
| No. | SNP rs# | Gene | Chr. | Chr. Position | Risk/Non-RiskAllele | HW-P | Call Rate | |
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| 1 | rs17106184 | 1 | 50444313 | A/G | 1.00 | 0.24 | 98.2 | |
| 2 | rs780094 | 2 | 27518370 | A/G | 0.78 | 1.00 | 98.9 | |
| 3 | rs3773159 | 3 | 127720095 | T/C | 1.00 | 0.79 | 98.9 | |
| 4 | rs4402960 | 3 | 185793899 | T/G | 0.21 | 0.09 | 98.1 | |
| 5 | rs1470579 | 3 | 185811292 | C/A | 0.19 | 0.05 | 98.1 | |
| 6 | rs702634 | 5 | 53975590 | A/G | 1.00 | 0.81 | 99.1 | |
| 7 | rs4712523 | 6 | 20657333 | A/G | 0.50 | 0.2 | 98.5 | |
| 8 | rs4712524 | 6 | 20657634 | A/G | 0.85 | 1.00 | 98.2 | |
| 9 | rs10946398 | 6 | 20660803 | A/C | 0.70 | 0.38 | 98.6 | |
| 10 | rs7756992 | 6 | 20679478 | A/G | 0.09 | 1.00 | 98.1 | |
| 11 | rs3130501 | 6 | 31168676 | G/A | 0.50 | 0.18 | 99.4 | |
| 12 | rs9472138 | 6 | 43844025 | C/T | 0.02 | 0.04 | 99.6 | |
| 13 | rs864745 | 7 | 28140937 | G/A | 0.48 | 0.89 | 99.0 | |
| 14 | rs13266634 | 8 | 117172544 | T/C | 0.05 | 0.49 | 98.0 | |
| 15 | rs10811661 | 9 | 22134095 | T/C | 0.57 | 0.29 | 98.8 | |
| 16 | rs12779790 | 10 | 12286011 | A/G | 0.71 | 0.47 | 99.3 | |
| 17 | rs1111875 | 10 | 92703125 | A/G | 0.57 | 0.008 | 99.0 | |
| 18 | rs7923837 | 10 | 92722160 | G/A | 0.17 | 0.58 | 98.6 | |
| 19 | rs7903146 | 10 | 112998590 | T/C | 1.00 | 1.00 | 98.6 | |
| 20 | rs1153188 | 12 | 54705212 | A/T | 1.00 | 1.00 | 99.0 | |
| 21 | rs1370176 | 15 | 62105035 | T/C | 1.00 | 0.91 | 98.8 | |
| 22 | rs1436953 | 15 | 62121815 | A/G | 0.84 | 0.83 | 98.8 | |
| 23 | rs8050136 | 16 | 53782363 | A/C | 0.83 | 0.07 | 97.8 | |
| 24 | rs7192960 | 16 | 79382666 | T/C | 1.00 | 1.00 | 99.8 | |
| 25 | rs75493593 | 17 | 7041768 | T/G | 1.00 | 0.82 | 98.5 | |
| 26 | rs75418188 | 17 | 7042164 | T/C | 1.00 | 0.66 | 98.5 | |
| 27 | rs13342232 | 17 | 7042621 | G/A | 1.00 | 0.66 | 98.0 | |
| 28 | rs13342692 | 17 | 7042968 | C/T | 1.00 | 1.00 | 99.0 | |
| 29 | rs117767867 | 17 | 7043011 | T/C | 1.00 | 1.00 | 99.0 | |
Chr., chromosome; HW-P, p-value for Hardy-Weinberg equilibrium.
Association of selected T2DM-related SNPs with T2DM risk.
| No. | SNP rs# | Gene | Frequency of Risk Allele | Crude Model | Adjusted Model * | |||
|---|---|---|---|---|---|---|---|---|
| Case | Control | OR (95% CI) | OR (95% CI) | |||||
| 1 | rs17106184 | 0.12 | 0.06 | 1.91 (1.36–2.69) | <0.0001 | 2.22 (1.53–3.24) | <0.0001 | |
| 2 | rs780094 | 0.53 | 0.52 | 0.96 (0.80–1.17) | 0.71 | 0.95 (0.77–1.17) | 0.60 | |
| 3 | rs3773159 | 0.12 | 0.10 | 1.16 (0.86–1.56) | 0.33 | 1.04 (0.75–1.45) | 0.82 | |
| 4 | rs4402960 | 0.25 | 0.25 | 1.02 (0.82–1.26) | 0.89 | 1.05 (0.83–1.34) | 0.67 | |
| 5 | rs1470579 | 0.27 | 0.26 | 1.04 (0.84–1.28) | 0.75 | 1.07 (0.85–1.36) | 0.55 | |
| 6 | rs702634 | 0.90 | 0.89 | 0.89 (0.66–1.20) | 0.45 | 0.77 (0.55–1.08) | 0.13 | |
| 7 | rs4712523 | 0.57 | 0.55 | 0.92 (0.77–1.11) | 0.41 | 0.84 (0.69–1.04) | 0.11 | |
| 8 | rs4712524 | 0.57 | 0.55 | 0.91 (0.75–1.11) | 0.33 | 0.84 (0.68–1.03) | 0.10 | |
| 9 | rs10946398 | 0.57 | 0.56 | 0.94 (0.78–1.14) | 0.55 | 0.87 (0.71–1.07) | 0.18 | |
| 10 | rs7756992 | 0.49 | 0.48 | 1.06 (0.88–1.28) | 0.55 | 1.13 (0.92–1.39) | 0.26 | |
| 11 | rs3130501 | 0.70 | 0.68 | 0.91 (0.74–1.11) | 0.35 | 0.81 (0.64–1.01) | 0.06 | |
| 12 | rs9472138 | 0.91 | 0.90 | 0.88 (0.64–1.20) | 0.41 | 0.75 (0.53–1.07) | 0.11 | |
| 13 | rs864745 | 0.27 | 0.24 | 1.17 (0.94–1.45) | 0.16 | 1.13 (0.89–1.43) | 0.32 | |
| 14 | rs13266634 | 0.42 | 0.42 | 1.02 (0.85–1.24) | 0.81 | 0.96 (0.78–1.18) | 0.68 | |
| 15 | rs10811661 | 0.54 | 0.52 | 0.91 (0.75–1.09) | 0.31 | 0.88 (0.71–1.08) | 0.21 | |
| 16 | rs12779790 | 0.85 | 0.84 | 0.89 (0.69–1.16) | 0.39 | 0.83 (0.62–1.11) | 0.20 | |
| 17 | rs7923837 | 0.78 | 0.77 | 0.96 (0.76–1.20) | 0.69 | 1.01 (0.79–1.30) | 0.91 | |
| 18 | rs7903146 | 0.09 | 0.09 | 1.01 (0.63–1.62) | 0.97 | 1.05 (0.63–1.74) | 0.86 | |
| 19 | rs1153188 | 0.09 | 0.09 | 1.21 (0.60–2.45) | 0.60 | 1.32 (0.58–2.96) | 0.51 | |
| 20 | rs1370176 | 0.30 | 0.29 | 1.02 (0.83–1.25) | 0.88 | 0.98 (0.78–1.23) | 0.87 | |
| 21 | rs1436953 | 0.36 | 0.35 | 1.06 (0.87–1.28) | 0.59 | 1.02 (0.82–1.27) | 0.85 | |
| 22 | rs8050136 | 0.13 | 0.11 | 1.26 (0.94–1.69) | 0.12 | 1.16 (0.84–1.60) | 0.37 | |
| 23 | rs7192960 | 0.29 | 0.29 | 1.06 (0.82–1.24) | 0.97 | 1.07 (0.85–1.34) | 0.59 | |
| 24 | rs75493593 | 0.13 | 0.12 | 1.13 (0.85–1.49) | 0.41 | 1.14 (0.84–1.56) | 0.39 | |
| 25 | rs75418188 | 0.13 | 0.12 | 1.11 (0.84–1.47) | 0.46 | 1.23 (0.83–1.53) | 0.45 | |
| 26 | rs13342232 | 0.14 | 0.12 | 1.11 (0.83–1.45) | 0.51 | 1.11 (0.82–1.52) | 0.49 | |
| 27 | rs13342692 | 0.13 | 0.13 | 1.08 (0.82–1.43) | 0.58 | 1.09 (0.80–1.48) | 0.58 | |
| 28 | rs117767867 | 0.13 | 0.13 | 1.06 (0.81–1.40) | 0.67 | 1.06 (0.78–1.44) | 0.71 | |
OR: odds ratio; 95% CI: 95% confidence interval; * Adjusted for age, sex, body mass index (BMI), triglycerides (TG), total cholesterol (TC), low-density lipoprotein cholesterol (LDL-C), systolic blood pressure (SBP), and diastolic blood pressure (DBP).
Allelic and genotypic distributions of rs17106184 in the healthy controls and T2DM patients.
| rs17106184 | Healthy Controls ( | T2DM Patients ( | Crude Model | Adjusted Model * | ||
|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) * | |||||
| Allele (%) | ||||||
| G | 784 (93.6) | 813 (88.3) | Ref. | Ref. | ||
| A | 54 (6.4) | 107 (11.7) | 1.91 (1.36–2.69) | <0.0001 | 2.22 (1.53–3.24) | <0.0001 |
| Genotype (%) | ||||||
| GG | 368 (87.8) | 359 (78) | Ref. | Ref. | - | |
| AG | 48 (11.5) | 95 (20.7) | 2.03 (1.39–2.96) | <0.0001 | 2.30 (1.53–3.52) | <0.0001 |
| AA | 3 (0.7) | 6 (1.3) | 2.05 (0.51–7.36) | 0.310 | 2.54 (0.70–11.03) | 0.130 |
| Dominant model (%) | ||||||
| GG | 368 (87.8) | 359 (78) | Ref. | Ref. | ||
| AA/AG | 51 (12.2) | 101 (22) | 2.03 (1.41–2.93) | 1.54 × 10−4 | 2.32 (1.57–3.47) | 4.61 × 10−5 |
| Recessive model (%) | ||||||
| GG/AG | 416 (99.3) | 454 (98.7) | Ref. | Ref. | ||
| AA | 3 (0.7) | 6 (1.3) | 1.85 (0.46–7.46) | 0.390 | 2.41 (0.63–10.12) | 0.170 |
| Additive model (%) | ||||||
| GG:GA:AA | - | - | 2.07 (1.34–3.02) | <0.0001 | 2.14 (1.47–3.12) | 7.96 × 10−5 |
OR: odds ratio; 95% CI: 95% confidence interval; * Adjusted for age, sex, BMI, TG, TC, LDL-C, SBP, and DBP.
Figure 1Odds ratio (OR) of T2DM according to the wGRS (a) and cGRS (b).