Literature DB >> 27573109

Endemic hydrothermal vent species identified in the open ocean seed bank.

Giorgio Gonnella1, Stefanie Böhnke2, Daniela Indenbirken3, Dieter Garbe-Schönberg4, Richard Seifert5, Christian Mertens6, Stefan Kurtz1, Mirjam Perner2.   

Abstract

Hydrothermal vent systems host microbial communities among which several microorganisms have been considered endemic to this type of habitat. It is still unclear how these organisms colonize geographically distant hydrothermal environments. Based on 16S rRNA gene sequences, we compare the bacterial communities of sixteen Atlantic hydrothermal vent samples with our own and publicly available global open ocean samples. Analysing sequences obtained from 63 million 16S rRNA genes, the genera we could identify in the open ocean waters contained 99.9% of the vent reads. This suggests that previously observed vent exclusiveness is, in most cases, probably an artefact of lower sequencing depth. These findings are a further step towards elucidating the role of the open ocean as a seed bank. They can explain the predicament of how species expected to be endemic to vent systems are able to colonize geographically distant hydrothermal habitats and contribute to our understanding of whether 'everything is really everywhere'.

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Year:  2016        PMID: 27573109     DOI: 10.1038/nmicrobiol.2016.86

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  31 in total

1.  UniFrac: an effective distance metric for microbial community comparison.

Authors:  Catherine Lozupone; Manuel E Lladser; Dan Knights; Jesse Stombaugh; Rob Knight
Journal:  ISME J       Date:  2010-09-09       Impact factor: 10.302

2.  Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts.

Authors:  Julie A Huber; Holly V Cantin; Susan M Huse; David B Mark Welch; Mitchell L Sogin; David A Butterfield
Journal:  FEMS Microbiol Ecol       Date:  2010-05-14       Impact factor: 4.194

3.  Microbial population structures in the deep marine biosphere.

Authors:  Julie A Huber; David B Mark Welch; Hilary G Morrison; Susan M Huse; Phillip R Neal; David A Butterfield; Mitchell L Sogin
Journal:  Science       Date:  2007-10-05       Impact factor: 47.728

4.  The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15 degrees N on the Mid-Atlantic Ridge.

Authors:  Mirjam Perner; Jan Kuever; Richard Seifert; Thomas Pape; Andrea Koschinsky; Katja Schmidt; Harald Strauss; Johannes F Imhoff
Journal:  FEMS Microbiol Ecol       Date:  2007-05-16       Impact factor: 4.194

5.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

6.  Linking geology, fluid chemistry, and microbial activity of basalt- and ultramafic-hosted deep-sea hydrothermal vent environments.

Authors:  M Perner; M Hansen; R Seifert; H Strauss; A Koschinsky; S Petersen
Journal:  Geobiology       Date:  2013-05-06       Impact factor: 4.407

7.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

8.  Widespread occurrence of an intranuclear bacterial parasite in vent and seep bathymodiolin mussels.

Authors:  Frank U Zielinski; Annelie Pernthaler; Sébastien Duperron; Luciana Raggi; Olav Giere; Christian Borowski; Nicole Dubilier
Journal:  Environ Microbiol       Date:  2009-02-17       Impact factor: 5.491

9.  Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.

Authors:  Anna Klindworth; Elmar Pruesse; Timmy Schweer; Jörg Peplies; Christian Quast; Matthias Horn; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-08-28       Impact factor: 16.971

10.  Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Authors:  Jai Ram Rideout; Yan He; Jose A Navas-Molina; William A Walters; Luke K Ursell; Sean M Gibbons; John Chase; Daniel McDonald; Antonio Gonzalez; Adam Robbins-Pianka; Jose C Clemente; Jack A Gilbert; Susan M Huse; Hong-Wei Zhou; Rob Knight; J Gregory Caporaso
Journal:  PeerJ       Date:  2014-08-21       Impact factor: 2.984

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  21 in total

1.  Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes.

Authors:  Luke R Thompson; Mohamed F Haroon; Ahmed A Shibl; Matt J Cahill; David K Ngugi; Gareth J Williams; James T Morton; Rob Knight; Kelly D Goodwin; Ulrich Stingl
Journal:  Appl Environ Microbiol       Date:  2019-06-17       Impact factor: 4.792

2.  Microbial ecology: Here, there and everywhere.

Authors:  Peter Girguis
Journal:  Nat Microbiol       Date:  2016-07-26       Impact factor: 17.745

3.  Phylogenetic and functional diverse ANME-1 thrive in Arctic hydrothermal vents.

Authors:  F Vulcano; C J Hahn; D Roerdink; H Dahle; E P Reeves; G Wegener; I H Steen; R Stokke
Journal:  FEMS Microbiol Ecol       Date:  2022-10-17       Impact factor: 4.519

4.  Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.

Authors:  Daan R Speth; Feiqiao B Yu; Stephanie A Connon; Sujung Lim; John S Magyar; Manet E Peña-Salinas; Stephen R Quake; Victoria J Orphan
Journal:  ISME J       Date:  2022-03-28       Impact factor: 11.217

Review 5.  The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally.

Authors:  Gregory J Dick
Journal:  Nat Rev Microbiol       Date:  2019-05       Impact factor: 60.633

6.  Global Diversity of Desert Hypolithic Cyanobacteria.

Authors:  Donnabella C Lacap-Bugler; Kevin K Lee; Stephen Archer; Len N Gillman; Maggie C Y Lau; Sebastian Leuzinger; Charles K Lee; Teruya Maki; Christopher P McKay; John K Perrott; Asunción de Los Rios-Murillo; Kimberley A Warren-Rhodes; David W Hopkins; Stephen B Pointing
Journal:  Front Microbiol       Date:  2017-05-16       Impact factor: 5.640

7.  How a life-like system emerges from a simple particle motion law.

Authors:  Thomas Schmickl; Martin Stefanec; Karl Crailsheim
Journal:  Sci Rep       Date:  2016-11-30       Impact factor: 4.379

8.  Thermophilic endospores associated with migrated thermogenic hydrocarbons in deep Gulf of Mexico marine sediments.

Authors:  Anirban Chakraborty; Emily Ellefson; Carmen Li; Daniel Gittins; James M Brooks; Bernie B Bernard; Casey R J Hubert
Journal:  ISME J       Date:  2018-03-29       Impact factor: 10.302

9.  Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits.

Authors:  Yuchen Han; Giorgio Gonnella; Nicole Adam; Axel Schippers; Lia Burkhardt; Stefan Kurtz; Ulrich Schwarz-Schampera; Henrike Franke; Mirjam Perner
Journal:  Sci Rep       Date:  2018-07-10       Impact factor: 4.379

10.  Sinking particles promote vertical connectivity in the ocean microbiome.

Authors:  Mireia Mestre; Clara Ruiz-González; Ramiro Logares; Carlos M Duarte; Josep M Gasol; M Montserrat Sala
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

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