Literature DB >> 20827291

UniFrac: an effective distance metric for microbial community comparison.

Catherine Lozupone1, Manuel E Lladser, Dan Knights, Jesse Stombaugh, Rob Knight.   

Abstract

Mesh:

Year:  2010        PMID: 20827291      PMCID: PMC3105689          DOI: 10.1038/ismej.2010.133

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


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  11 in total

1.  Evaluating different approaches that test whether microbial communities have the same structure.

Authors:  Patrick D Schloss
Journal:  ISME J       Date:  2008-01-31       Impact factor: 10.302

2.  Soil microbial community responses to multiple experimental climate change drivers.

Authors:  Hector F Castro; Aimée T Classen; Emily E Austin; Richard J Norby; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

3.  Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing.

Authors:  Ingmar S Middelbos; Brittany M Vester Boler; Ani Qu; Bryan A White; Kelly S Swanson; George C Fahey
Journal:  PLoS One       Date:  2010-03-22       Impact factor: 3.240

Review 4.  Direct sequencing of the human microbiome readily reveals community differences.

Authors:  Justin Kuczynski; Elizabeth K Costello; Diana R Nemergut; Jesse Zaneveld; Christian L Lauber; Dan Knights; Omry Koren; Noah Fierer; Scott T Kelley; Ruth E Ley; Jeffrey I Gordon; Rob Knight
Journal:  Genome Biol       Date:  2010-05-05       Impact factor: 13.583

5.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

6.  Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities.

Authors:  Catherine A Lozupone; Micah Hamady; Scott T Kelley; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2007-01-12       Impact factor: 4.792

7.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

8.  Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Authors:  Micah Hamady; Catherine Lozupone; Rob Knight
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

9.  Evolution of mammals and their gut microbes.

Authors:  Ruth E Ley; Micah Hamady; Catherine Lozupone; Peter J Turnbaugh; Rob Roy Ramey; J Stephen Bircher; Michael L Schlegel; Tammy A Tucker; Mark D Schrenzel; Rob Knight; Jeffrey I Gordon
Journal:  Science       Date:  2008-05-22       Impact factor: 47.728

10.  A core gut microbiome in obese and lean twins.

Authors:  Peter J Turnbaugh; Micah Hamady; Tanya Yatsunenko; Brandi L Cantarel; Alexis Duncan; Ruth E Ley; Mitchell L Sogin; William J Jones; Bruce A Roe; Jason P Affourtit; Michael Egholm; Bernard Henrissat; Andrew C Heath; Rob Knight; Jeffrey I Gordon
Journal:  Nature       Date:  2008-11-30       Impact factor: 49.962

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1.  Marine Oxygen-Deficient Zones Harbor Depauperate Denitrifying Communities Compared to Novel Genetic Diversity in Coastal Sediments.

Authors:  Jennifer L Bowen; David Weisman; Michie Yasuda; Amal Jayakumar; Hilary G Morrison; Bess B Ward
Journal:  Microb Ecol       Date:  2015-02-28       Impact factor: 4.552

2.  Sexually Dimorphic Influence of Neonatal Antibiotics on Bone.

Authors:  Matteo M Pusceddu; Patricia J Stokes; Alice Wong; Melanie G Gareau; Damian C Genetos
Journal:  J Orthop Res       Date:  2019-07-26       Impact factor: 3.494

3.  Validation of IMP dehydrogenase inhibitors in a mouse model of cryptosporidiosis.

Authors:  Suresh Kumar Gorla; Nina N McNair; Guangyi Yang; Song Gao; Ming Hu; Venkatakrishna R Jala; Bodduluri Haribabu; Boris Striepen; Gregory D Cuny; Jan R Mead; Lizbeth Hedstrom
Journal:  Antimicrob Agents Chemother       Date:  2013-12-23       Impact factor: 5.191

4.  The Effect of Inoculation of a Diazotrophic Bacterial Consortium on the Indigenous Bacterial Community Structure of Sugarcane Apoplast Fluid.

Authors:  Carlos M Dos-Santos; Náthalia V S Ribeiro; Stefan Schwab; José I Baldani; Marcia S Vidal
Journal:  Curr Microbiol       Date:  2021-06-25       Impact factor: 2.188

5.  High throughput sequencing reveals distinct microbial populations within the mucosal and luminal niches in healthy individuals.

Authors:  Yehuda Ringel; Nitsan Maharshak; Tamar Ringel-Kulka; Elizabeth Ashley Wolber; R Balfour Sartor; Ian M Carroll
Journal:  Gut Microbes       Date:  2015

6.  Microbiota organization is a distinct feature of proximal colorectal cancers.

Authors:  Christine M Dejea; Elizabeth C Wick; Elizabeth M Hechenbleikner; James R White; Jessica L Mark Welch; Blair J Rossetti; Scott N Peterson; Erik C Snesrud; Gary G Borisy; Mark Lazarev; Ellen Stein; Jamuna Vadivelu; April C Roslani; Ausuma A Malik; Jane W Wanyiri; Khean L Goh; Iyadorai Thevambiga; Kai Fu; Fengyi Wan; Nicolas Llosa; Franck Housseau; Katharine Romans; XinQun Wu; Florencia M McAllister; Shaoguang Wu; Bert Vogelstein; Kenneth W Kinzler; Drew M Pardoll; Cynthia L Sears
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

7.  Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

Authors:  Leopoldo N Segal; Jose C Clemente; Jun-Chieh J Tsay; Sergei B Koralov; Brian C Keller; Benjamin G Wu; Yonghua Li; Nan Shen; Elodie Ghedin; Alison Morris; Phillip Diaz; Laurence Huang; William R Wikoff; Carles Ubeda; Alejandro Artacho; William N Rom; Daniel H Sterman; Ronald G Collman; Martin J Blaser; Michael D Weiden
Journal:  Nat Microbiol       Date:  2016-04-04       Impact factor: 17.745

8.  Longitudinal Analysis of Microbiota in Microalga Nannochloropsis salina Cultures.

Authors:  Haifeng Geng; Kenneth L Sale; Mary Bao Tran-Gyamfi; Todd W Lane; Eizadora T Yu
Journal:  Microb Ecol       Date:  2016-03-08       Impact factor: 4.552

9.  The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples.

Authors:  Steven N Evans; Frederick A Matsen
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-02-15       Impact factor: 4.488

10.  Intestinal dysbiosis and bacterial enteroinvasion in a murine model of Hirschsprung's disease.

Authors:  Joseph F Pierre; Amanda J Barlow-Anacker; Christopher S Erickson; Aaron F Heneghan; Glen E Leverson; Scot E Dowd; Miles L Epstein; Kenneth A Kudsk; Ankush Gosain
Journal:  J Pediatr Surg       Date:  2014-08       Impact factor: 2.545

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