Literature DB >> 36190327

Phylogenetic and functional diverse ANME-1 thrive in Arctic hydrothermal vents.

F Vulcano1, C J Hahn2, D Roerdink3, H Dahle4, E P Reeves3, G Wegener2,5,6, I H Steen1, R Stokke1.   

Abstract

The methane-rich areas, the Loki's Castle vent field and the Jan Mayen vent field at the Arctic Mid Ocean Ridge (AMOR), host abundant niches for anaerobic methane-oxidizers, which are predominantly filled by members of the ANME-1. In this study, we used a metagenomic-based approach that revealed the presence of phylogenetic and functional different ANME-1 subgroups at AMOR, with heterogeneous distribution. Based on a common analysis of ANME-1 genomes from AMOR and other geographic locations, we observed that AMOR subgroups clustered with a vent-specific ANME-1 group that occurs solely at vents, and with a generalist ANME-1 group, with a mixed environmental origin. Generalist ANME-1 are enriched in genes coding for stress response and defense strategies, suggesting functional diversity among AMOR subgroups. ANME-1 encode a conserved energy metabolism, indicating strong adaptation to sulfate-methane-rich sediments in marine systems, which does not however prevent global dispersion. A deep branching family named Ca. Veteromethanophagaceae was identified. The basal position of vent-related ANME-1 in phylogenomic trees suggests that ANME-1 originated at hydrothermal vents. The heterogeneous and variable physicochemical conditions present in diffuse venting areas of hydrothermal fields could have favored the diversification of ANME-1 into lineages that can tolerate geochemical and environmental variations.
© The Author(s) 2022. Published by Oxford University Press on behalf of FEMS.

Entities:  

Keywords:  ANME-1; comparative genomics: thermophily; hydrothermal vents; phylogenomics

Mesh:

Substances:

Year:  2022        PMID: 36190327      PMCID: PMC9576274          DOI: 10.1093/femsec/fiac117

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.519


  72 in total

1.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

2.  Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments.

Authors:  V J Orphan; K U Hinrichs; W Ussler; C K Paull; L T Taylor; S P Sylva; J M Hayes; E F Delong
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

3.  Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments.

Authors:  Sara Kleindienst; Alban Ramette; Rudolf Amann; Katrin Knittel
Journal:  Environ Microbiol       Date:  2012-08-08       Impact factor: 5.491

4.  An archaeal symbiont-host association from the deep terrestrial subsurface.

Authors:  Katrin Schwank; Till L V Bornemann; Nina Dombrowski; Anja Spang; Jillian F Banfield; Alexander J Probst
Journal:  ISME J       Date:  2019-05-02       Impact factor: 10.302

Review 5.  The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally.

Authors:  Gregory J Dick
Journal:  Nat Rev Microbiol       Date:  2019-05       Impact factor: 60.633

6.  A standardized archaeal taxonomy for the Genome Taxonomy Database.

Authors:  Christian Rinke; Maria Chuvochina; Aaron J Mussig; Pierre-Alain Chaumeil; Adrián A Davín; David W Waite; William B Whitman; Donovan H Parks; Philip Hugenholtz
Journal:  Nat Microbiol       Date:  2021-06-21       Impact factor: 17.745

7.  Novel Barite Chimneys at the Loki's Castle Vent Field Shed Light on Key Factors Shaping Microbial Communities and Functions in Hydrothermal Systems.

Authors:  Ida H Steen; Håkon Dahle; Runar Stokke; Irene Roalkvam; Frida-Lise Daae; Hans Tore Rapp; Rolf B Pedersen; Ingunn H Thorseth
Journal:  Front Microbiol       Date:  2016-01-07       Impact factor: 5.640

8.  Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments.

Authors:  Friederike Gründger; Vincent Carrier; Mette M Svenning; Giuliana Panieri; Tobias R Vonnahme; Scott Klasek; Helge Niemann
Journal:  Sci Rep       Date:  2019-07-05       Impact factor: 4.379

9.  GToTree: a user-friendly workflow for phylogenomics.

Authors:  Michael D Lee
Journal:  Bioinformatics       Date:  2019-10-15       Impact factor: 6.937

10.  Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.

Authors:  Connor T Skennerton; Karuna Chourey; Ramsunder Iyer; Robert L Hettich; Gene W Tyson; Victoria J Orphan
Journal:  mBio       Date:  2017-08-01       Impact factor: 7.867

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