Literature DB >> 27564854

Overall energy conversion efficiency of a photosynthetic vesicle.

Melih Sener1,2, Johan Strumpfer1,3, Abhishek Singharoy1, C Neil Hunter4, Klaus Schulten1,2,3.   

Abstract

The chromatophore of purple bacteria is an intracellular spherical vesicle that exists in numerous copies in the cell and that efficiently converts sunlight into ATP synthesis, operating typically under low light conditions. Building on an atomic-level structural model of a low-light-adapted chromatophore vesicle from Rhodobacter sphaeroides, we investigate the cooperation between more than a hundred protein complexes in the vesicle. The steady-state ATP production rate as a function of incident light intensity is determined after identifying quinol turnover at the cytochrome bc1 complex (cytb⁢c1) as rate limiting and assuming that the quinone/quinol pool of about 900 molecules acts in a quasi-stationary state. For an illumination condition equivalent to 1% of full sunlight, the vesicle exhibits an ATP production rate of 82 ATP molecules/s. The energy conversion efficiency of ATP synthesis at illuminations corresponding to 1%-5% of full sunlight is calculated to be 0.12-0.04, respectively. The vesicle stoichiometry, evolutionarily adapted to the low light intensities in the habitat of purple bacteria, is suboptimal for steady-state ATP turnover for the benefit of protection against over-illumination.

Entities:  

Keywords:  ATP production; Rhodobacter sphaeroides; bacterial photosynthesis; biophysics; computational biology; energy conversion efficiency; excitation transfer; structural biology; systems biology

Mesh:

Substances:

Year:  2016        PMID: 27564854      PMCID: PMC5001839          DOI: 10.7554/eLife.09541

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  92 in total

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Journal:  Q Rev Biophys       Date:  2002-02       Impact factor: 5.318

2.  Molecular evidence for the early evolution of photosynthesis.

Authors:  J Xiong; W M Fischer; K Inoue; M Nakahara; C E Bauer
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

3.  Electron transfer between primary and secondary donors in Rhodospirillum rubrum: evidence for a dimeric association of reaction centers.

Authors:  P Joliot; A Verméglio; A Joliot
Journal:  Biochemistry       Date:  1990-05-08       Impact factor: 3.162

4.  Excited state dynamics in photosynthetic reaction center and light harvesting complex 1.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

5.  Light harvesting complex II B850 excitation dynamics.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

6.  Turnover number of Escherichia coli F0F1 ATP synthase for ATP synthesis in membrane vesicles.

Authors:  C Etzold; G Deckers-Hebestreit; K Altendorf
Journal:  Eur J Biochem       Date:  1997-01-15

7.  General random matrix approach to account for the effect of static disorder on the spectral properties of light harvesting systems.

Authors:  Melih K Sener; Klaus Schulten
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-03-06

8.  Energy transfer in the inhomogeneously broadened core antenna of purple bacteria: a simultaneous fit of low-intensity picosecond absorption and fluorescence kinetics.

Authors:  T Pullerits; K J Visscher; S Hess; V Sundström; A Freiberg; K Timpmann; R van Grondelle
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

9.  Coupling of light-induced electron transfer to proton uptake in photosynthesis.

Authors:  André Remy; Klaus Gerwert
Journal:  Nat Struct Biol       Date:  2003-08

10.  Interference lithographic nanopatterning of plant and bacterial light-harvesting complexes on gold substrates.

Authors:  Samson Patole; Cvetelin Vasilev; Osama El-Zubir; Lin Wang; Matthew P Johnson; Ashley J Cadby; Graham J Leggett; C Neil Hunter
Journal:  Interface Focus       Date:  2015-08-06       Impact factor: 3.906

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  22 in total

1.  Lateral Segregation of Photosystem I in Cyanobacterial Thylakoids.

Authors:  Craig MacGregor-Chatwin; Melih Sener; Samuel F H Barnett; Andrew Hitchcock; Meghan C Barnhart-Dailey; Karim Maghlaoui; James Barber; Jerilyn A Timlin; Klaus Schulten; C Neil Hunter
Journal:  Plant Cell       Date:  2017-03-31       Impact factor: 11.277

2.  Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations.

Authors:  Tyler M Earnest; Reika Watanabe; John E Stone; Julia Mahamid; Wolfgang Baumeister; Elizabeth Villa; Zaida Luthey-Schulten
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

3.  Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism.

Authors:  Abhishek Singharoy; Christopher Maffeo; Karelia H Delgado-Magnero; David J K Swainsbury; Melih Sener; Ulrich Kleinekathöfer; John W Vant; Jonathan Nguyen; Andrew Hitchcock; Barry Isralewitz; Ivan Teo; Danielle E Chandler; John E Stone; James C Phillips; Taras V Pogorelov; M Ilaria Mallus; Christophe Chipot; Zaida Luthey-Schulten; D Peter Tieleman; C Neil Hunter; Emad Tajkhorshid; Aleksei Aksimentiev; Klaus Schulten
Journal:  Cell       Date:  2019-11-14       Impact factor: 41.582

4.  Determination of Cell Doubling Times from the Return-on-Investment Time of Photosynthetic Vesicles Based on Atomic Detail Structural Models.

Authors:  Andrew Hitchcock; C Neil Hunter; Melih Sener
Journal:  J Phys Chem B       Date:  2017-03-16       Impact factor: 2.991

5.  Anionic Lipids Confine Cytochrome c2 to the Surface of Bioenergetic Membranes without Compromising Its Interaction with Redox Partners.

Authors:  Chun Kit Chan; Abhishek Singharoy; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2022-01-13       Impact factor: 3.162

6.  Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales.

Authors:  Stuart Levy; John E Stone; Melih Sener; A J Christensen; Barry Isralewitz; Robert Patterson; Kalina Borkiewicz; Jeffrey Carpenter; C Neil Hunter; Zaida Luthey-Schulten; Donna Cox
Journal:  Parallel Comput       Date:  2020-12-15       Impact factor: 0.986

7.  Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 Å: the structural basis for dimerisation.

Authors:  Pu Qian; Tristan I Croll; Andrew Hitchcock; Philip J Jackson; Jack H Salisbury; Pablo Castro-Hartmann; Kasim Sader; David J K Swainsbury; C Neil Hunter
Journal:  Biochem J       Date:  2021-11-12       Impact factor: 3.857

8.  Barriers to 3-Hydroxypropionate-Dependent Growth of Rhodobacter sphaeroides by Distinct Disruptions of the Ethylmalonyl Coenzyme A Pathway.

Authors:  Steven J Carlson; Angela Fleig; M Kelsey Baron; Ivan A Berg; Birgit E Alber
Journal:  J Bacteriol       Date:  2019-01-28       Impact factor: 3.490

Review 9.  Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies.

Authors:  Christophe Chipot; François Dehez; Jason R Schnell; Nicole Zitzmann; Eva Pebay-Peyroula; Laurent J Catoire; Bruno Miroux; Edmund R S Kunji; Gianluigi Veglia; Timothy A Cross; Paul Schanda
Journal:  Chem Rev       Date:  2018-02-28       Impact factor: 60.622

10.  Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels.

Authors:  David J K Swainsbury; Pu Qian; Philip J Jackson; Kaitlyn M Faries; Dariusz M Niedzwiedzki; Elizabeth C Martin; David A Farmer; Lorna A Malone; Rebecca F Thompson; Neil A Ranson; Daniel P Canniffe; Mark J Dickman; Dewey Holten; Christine Kirmaier; Andrew Hitchcock; C Neil Hunter
Journal:  Sci Adv       Date:  2021-01-13       Impact factor: 14.136

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