Literature DB >> 33523887

Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels.

David J K Swainsbury1, Pu Qian2,3, Philip J Jackson2,4, Kaitlyn M Faries5, Dariusz M Niedzwiedzki6,7, Elizabeth C Martin2, David A Farmer2, Lorna A Malone2, Rebecca F Thompson8, Neil A Ranson8, Daniel P Canniffe9, Mark J Dickman4, Dewey Holten5, Christine Kirmaier5, Andrew Hitchcock2, C Neil Hunter1.   

Abstract

The reaction-center light-harvesting complex 1 (RC-LH1) is the core photosynthetic component in purple phototrophic bacteria. We present two cryo-electron microscopy structures of RC-LH1 complexes from Rhodopseudomonas palustris A 2.65-Å resolution structure of the RC-LH114-W complex consists of an open 14-subunit LH1 ring surrounding the RC interrupted by protein-W, whereas the complex without protein-W at 2.80-Å resolution comprises an RC completely encircled by a closed, 16-subunit LH1 ring. Comparison of these structures provides insights into quinone dynamics within RC-LH1 complexes, including a previously unidentified conformational change upon quinone binding at the RC QB site, and the locations of accessory quinone binding sites that aid their delivery to the RC. The structurally unique protein-W prevents LH1 ring closure, creating a channel for accelerated quinone/quinol exchange.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).

Entities:  

Year:  2021        PMID: 33523887      PMCID: PMC7806223          DOI: 10.1126/sciadv.abe2631

Source DB:  PubMed          Journal:  Sci Adv        ISSN: 2375-2548            Impact factor:   14.136


  54 in total

1.  Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris.

Authors:  Aleksander W Roszak; Tina D Howard; June Southall; Alastair T Gardiner; Christopher J Law; Neil W Isaacs; Richard J Cogdell
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

2.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

3.  Correlation between protein flexibility and electron transfer from QA-* to QB in PSII membrane fragments from spinach.

Authors:  A Garbers; F Reifarth; J Kurreck; G Renger; F Parak
Journal:  Biochemistry       Date:  1998-08-18       Impact factor: 3.162

4.  Structural details of an interaction between cardiolipin and an integral membrane protein.

Authors:  K E McAuley; P K Fyfe; J P Ridge; N W Isaacs; R J Cogdell; M R Jones
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

5.  Structure of photosynthetic LH1-RC supercomplex at 1.9 Å resolution.

Authors:  Long-Jiang Yu; Michihiro Suga; Zheng-Yu Wang-Otomo; Jian-Ren Shen
Journal:  Nature       Date:  2018-04-04       Impact factor: 49.962

6.  The acceptor quinone complex of Rhodopseudomonas viridis reaction centers.

Authors:  R J Shopes; C A Wraight
Journal:  Biochim Biophys Acta       Date:  1985-03-13

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

9.  Explaining the visible and near-infrared circular dichroism spectra of light-harvesting 1 complexes from purple bacteria: a modeling study.

Authors:  Sofia Georgakopoulou; Rienk van Grondelle; Gert van der Zwan
Journal:  J Phys Chem B       Date:  2006-02-23       Impact factor: 2.991

10.  Redox Regulation of a Light-Harvesting Antenna Complex in an Anoxygenic Phototroph.

Authors:  Kathryn R Fixen; Yasuhiro Oda; Caroline S Harwood
Journal:  mBio       Date:  2019-11-26       Impact factor: 7.867

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  8 in total

1.  Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 Å: the structural basis for dimerisation.

Authors:  Pu Qian; Tristan I Croll; Andrew Hitchcock; Philip J Jackson; Jack H Salisbury; Pablo Castro-Hartmann; Kasim Sader; David J K Swainsbury; C Neil Hunter
Journal:  Biochem J       Date:  2021-11-12       Impact factor: 3.857

2.  Preparation of Photo-Bioelectrochemical Cells With the RC-LH Complex From Roseiflexus castenholzii.

Authors:  Jinsong Du; Jiyu Xin; Menghua Liu; Xin Zhang; Huimin He; Jingyi Wu; Xiaoling Xu
Journal:  Front Microbiol       Date:  2022-06-16       Impact factor: 6.064

3.  Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.

Authors:  Peng Cao; Laura Bracun; Atsushi Yamagata; Bern M Christianson; Tatsuki Negami; Baohua Zou; Tohru Terada; Daniel P Canniffe; Mikako Shirouzu; Mei Li; Lu-Ning Liu
Journal:  Nat Commun       Date:  2022-04-13       Impact factor: 17.694

4.  Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-Å resolution.

Authors:  Laura Bracun; Atsushi Yamagata; Bern M Christianson; Tohru Terada; Daniel P Canniffe; Mikako Shirouzu; Lu-Ning Liu
Journal:  Sci Adv       Date:  2021-06-16       Impact factor: 14.136

5.  Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex at 2.5 Å.

Authors:  Pu Qian; Tristan I Croll; David J K Swainsbury; Pablo Castro-Hartmann; Nigel W Moriarty; Kasim Sader; C Neil Hunter
Journal:  Biochem J       Date:  2021-09-17       Impact factor: 3.857

6.  2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem.

Authors:  Pu Qian; Alastair T Gardiner; Ivana Šímová; Katerina Naydenova; Tristan I Croll; Philip J Jackson; Miroslav Kloz; Petra Čubáková; Marek Kuzma; Yonghui Zeng; Pablo Castro-Hartmann; Bart van Knippenberg; Kenneth N Goldie; David Kaftan; Pavel Hrouzek; Jan Hájek; Jon Agirre; C Alistair Siebert; David Bína; Kasim Sader; Henning Stahlberg; Roman Sobotka; Christopher J Russo; Tomáš Polívka; C Neil Hunter; Michal Koblížek
Journal:  Sci Adv       Date:  2022-02-16       Impact factor: 14.136

7.  Cryo-EM Structure of the Rhodobacter sphaeroides Light-Harvesting 2 Complex at 2.1 Å.

Authors:  Pu Qian; David J K Swainsbury; Tristan I Croll; Pablo Castro-Hartmann; Giorgio Divitini; Kasim Sader; C Neil Hunter
Journal:  Biochemistry       Date:  2021-10-26       Impact factor: 3.162

8.  A previously unrecognized membrane protein in the Rhodobacter sphaeroides LH1-RC photocomplex.

Authors:  Kazutoshi Tani; Kenji V P Nagashima; Ryo Kanno; Saki Kawamura; Riku Kikuchi; Malgorzata Hall; Long-Jiang Yu; Yukihiro Kimura; Michael T Madigan; Akira Mizoguchi; Bruno M Humbel; Zheng-Yu Wang-Otomo
Journal:  Nat Commun       Date:  2021-11-02       Impact factor: 14.919

  8 in total

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