| Literature DB >> 27557121 |
David Molina1, Julián Pérez-Beteta1, Alicia Martínez-González1, Juan M Sepúlveda2, Sergi Peralta3, Miguel J Gil-Gil4, Gaspar Reynes5, Ana Herrero6, Ramón De Las Peñas7, Raquel Luque8, Jaume Capellades9, Carmen Balaña10, Víctor M Pérez-García1.
Abstract
BACKGROUND: Antiangiogenic therapies for glioblastoma (GBM) such as bevacizumab (BVZ), have been unable to extend survival in large patient cohorts. However, a subset of patients having angiogenesis-dependent tumors might benefit from these therapies. Currently, there are no biomarkers allowing to discriminate responders from non-responders before the start of the therapy.Entities:
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Year: 2016 PMID: 27557121 PMCID: PMC4996463 DOI: 10.1371/journal.pone.0161484
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Summary of patient characteristics, MRI data and volumetric parameters for the 40 patients included in the study.
| Age (median, range) | 64 (36–74) |
| Sex | 21 Male (52.50%) |
| 19 Female (47.50%) | |
| Survival (median, range) | 10.78 months (2.30–52.33) |
| Treatment group | 17 Temozolomide+Bevacizumab (42.50%) |
| 23 Temozolomide (57.50%) | |
| Pixel spacing (mm) | 0.67 (0.43–1.04) |
| Slice thickness (mm) | 2.54 (0.80–6.00) |
| Slices per patient | 142 (16–301) |
| Tumor volume ( | 28.32 (0.99–79.23) |
| Contrast enhancing volume ( | 19.99 (0.99–68.11) |
| Maximal tumor diameter (cm) | 5.55 (1.48–10.57) |
| Spherical rim width (cm) | 0.67 (0.25–2.07) |
Comparison of classical prognostic biomarkers values between the different patient subgroups.
| Genom009 | Present study | BVZ+ (present study) | BVZ- (present study) | |
|---|---|---|---|---|
| 93 | 40 | 17 | 23 | |
| 63 (13.00)[36, 79] | 64 (14.50)[36, 74] | 63 (8.00)[51, 74] | 64 (15.00)[36, 74] | |
| 1.09(0.69)[0.0, 2.0] | 1.00(0.78)[0.0, 2.0] | 0.82(0.81)[0.0, 2.0] | 1.13(0.76)[0.0, 2.0] | |
| 86.89(15.26)[50.0, 100.0] | 87.25(15.19)[55.0, 100.0] | 90.00(15.10)[55.0, 100.0] | 85.22(15.26)[55.0, 100.0] | |
| - | 28.32(23.31)[1.00, 79.23] | 26.24(25.21)[1.00, 79.23] | 29.85(22.26)[1.16, 69.18] |
Fig 1Visual examples of two tumors with different geometric heterogeneities.
The first case corresponds to a rim-heterogeneous tumor (Fig 1A and 1B), having large geometric heterogeneity. The second case is a geometrically regular tumor (Fig 1C and 1D), with smaller geometric heterogeneity.
Definition of the heterogeneity measures computed in this study.
| Type of measure | Name | Formula |
|---|---|---|
| Co-occurrence matrix | Entropy [ | |
| Co-occurrence matrix | Homogeneity [ | |
| Co-occurrence matrix | Contrast [ | |
| Co-occurrence matrix | Dissimilarity [ | |
| Co-occurrence matrix | Uniformity [ | |
| Run-length matrix | Long Run Emphasis (LRE) [ | |
| Run-length matrix | Short Run Emphasis (SRE) [ | |
| Run-length matrix | Low Gray-level Run Emphasis (LGRE) [ | |
| Run-length matrix | High Gray-level Run Emphasis (HGRE) [ | |
| Run-length matrix | Short Run Low Gray-level Emphasis (SRLRE) [ | |
| Run-length matrix | Short Run High Gray-level Emphasis (SRHGE) [ | |
| Run-length matrix | Long Run Low Gray-level Emphasis (LRLGE) [ | |
| Run-length matrix | Long Run High Gray-level Emphasis (LRHGE) [ | |
| Run-length matrix | Gray-Level Non-Uniformity (GLNU) [ | |
| Run-length matrix | Run-Length Non-Uniformity (RLNU) [ | |
| Run-length matrix | Run Percentage (RPC) [ |
For CM measures CM(i,j) stands for the co-occurrence matrix, N is the number of classes of gray-levels taken (32 in this study). For RLM measures RLM(i,j) is the run-length matrix, nr is the number of runs, N is the number of classes of gray-levels and M is the size in voxels of the largest region found.
Summary of univariate Cox and Kaplan-Meier analysis for the more representative variables included in the study.
Significant results are boldfaced.
| 17 patients (BVZ) | 23 patients (No BVZ) | |||
|---|---|---|---|---|
| Variables | HR, (CI-95%) | p-value | HR, (CI-95%) | p-value |
| Age (< = 65.00 vs >65.00) (years) | 2.721 (0.879, 8.425) | 0.072 | 2.331 (0.864, 6.285) | 0.084 |
| Mean: Age (< = 63.00 vs >63.00) (years) | 2.485 (0.846, 7.299) | 0.088 | 1.341 (0.573, 3.138) | 0.496 |
| Median: Age (< = 63.00 vs >63.00) (years) | 2.485 (0.846, 7.299) | 0.088 | 1.341 (0.573, 3.138) | 0.496 |
| 2.140 (0.855, 5.361) | 0.096 | |||
| Mean: | 1.099 (0.389, 3.106) | 0.858 | 1.843 (0.757, 4.488) | 0.171 |
| Median: | 1.549 (0.552, 4.348) | 0.402 | 1.843 (0.757, 4.488) | 0.171 |
| 1.502 (0.432, 5.228) | 0.519 | |||
| Mean: | 1.927 (0.635, 5.850) | 0.239 | 1.453 (0.615, 3.435) | 0.391 |
| Median: | 2.676 (0.845, 8.471) | 0.083 | 1.824 (0.749, 4.443) | 0.178 |
| 1.502 (0.432, 5.228) | 0.519 | |||
| Mean: | 2.676 (0.845, 8.471) | 0.083 | 1.288 (0.545, 3.047) | 0.562 |
| Median: | 1.824 (0.749, 4.443) | 0.178 | ||
| 1.070 (0.441, 2.596) | 0.881 | |||
| Mean: | 1.070 (0.441, 2.596) | 0.881 | ||
| Median: | 1.268 (0.362, 4.438) | 0.709 | ||
Fig 2Kaplan-Meier curves for the each significant geometrical variable (plus age, that was marginally significant) using the thresholds of Table 4: (a,b) age, (c,d) V, (e,f) V, (g,h) V and (i,j) G. The median differences, p-values and number of patients per group are indicated in each subplot. Panels (a, c, e, g and i) correspond to patients in the BVZ+TMZ arm while panels (b, d, f, h and j) correspond to the TMZ arm.
Fig 3Kaplan-Meier curves comparing survival of subgroups of patients below or above the optimal thresholds shown in Table 4: (a,b) age, (c,d) V, (e,f) V, (g,h) V and (i,j) G. The median differences, p-values and number of patients in each subgroup are indicated.
Spearman correlation coefficients between every pair of significant variables in our study.
Boldfaced numbers indicate significant correlations (p<0.05).
| GH | ||||
|---|---|---|---|---|
Overall survival, G, V and MGMT status (when available) for all of the patients included in the study.
Within each group (BVZ+ or BVZ-) patients are ordered by survival. Grey cells indicate patients in the favourable groups: either small G (dark grey) or unmethilated MGMT (light grey).
| BVZ- | BVZ+ | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Patient | OS | MGMT | Patient | OS | MGMT | ||||
| 1 | 70 | 14.182 | 0.611 | 1 | 24 | 72 | 2.979 | 0.752 | 1 |
| 2 | 71 | 0.070 | 0.444 | - | 25 | 121 | 4.135 | 0.623 | 0 |
| 3 | 71 | 0.439 | 0.292 | 0 | 26 | 128 | 3.866 | 0.635 | 1 |
| 4 | 82 | 39.114 | 0.719 | 0 | 27 | 131 | 12.598 | 0.607 | 0 |
| 5 | 86 | 8.699 | 0.609 | 0 | 28 | 213 | 6.401 | 0.792 | 1 |
| 6 | 102 | 3.640 | 0.562 | 0 | 29 | 294 | 6.875 | 0.633 | 1 |
| 7 | 126 | 1.422 | 0.395 | 0 | 30 | 311 | 30.054 | 0.721 | - |
| 8 | 132 | 8.243 | 0.572 | 0 | 31 | 336 | 19.244 | 0.698 | 0 |
| 9 | 144 | 2.384 | 0.467 | 0 | 32 | 395 | 0.220 | 0.588 | 0 |
| 10 | 176 | 10.236 | 0.589 | 0 | 33 | 416 | 4.486 | 0.544 | 1 |
| 11 | 227 | 16.513 | 0.621 | - | 34 | 511 | 11.819 | 0.662 | - |
| 12 | 245 | 2.349 | 0.646 | - | 35 | 683 | 0.011 | 0.368 | - |
| 13 | 320 | 14.882 | 0.505 | - | 36 | 803 | 11.677 | 0.531 | 1 |
| 14 | 375 | 30.470 | 0.623 | 0 | 37 | 894 | 1.884 | 0.601 | 1 |
| 15 | 416 | 3.695 | 0.453 | 1 | 38 | 932 | 7.473 | 0.723 | - |
| 16 | 422 | 0.872 | 0.539 | 1 | 39 | 1363 | 0.093 | 0.346 | 1 |
| 17 | 453 | 0.054 | 0.235 | 0 | 40 | 1592 | 0.682 | 0.509 | 1 |
| 18 | 494 | 26.232 | 0.589 | 1 | |||||
| 19 | 533 | 1.527 | 0.412 | 1 | |||||
| 20 | 584 | 20.928 | 0.581 | - | |||||
| 21 | 629 | 0.825 | 0.610 | - | |||||
| 22 | 909 | 0.353 | 0.725 | - | |||||
| 23 | 1205 | 1.546 | 0.402 | 0 | |||||