Literature DB >> 27552080

Conformational insight into multi-protein signaling assemblies by hydrogen-deuterium exchange mass spectrometry.

Rane A Harrison1, John R Engen2.   

Abstract

Hydrogen-deuterium exchange (HDX) mass spectrometry (MS) can provide information about proteins that can be challenging to obtain by other means. Structure/function relationships, binding interactions, and the effects of modification have all been measured with HDX MS for a diverse and growing array of signaling proteins and multiprotein signaling complexes. As a result of hardware and software improvements, receptors and complexes involved in cellular signaling-including those associated with membranes-can now be studied. The growing body of HDX MS studies of signaling complexes at membranes is particularly exciting. Recent examples are presented to illustrate what can be learned about signaling proteins with this technique.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27552080      PMCID: PMC5154849          DOI: 10.1016/j.sbi.2016.08.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  Conformational changes in the G protein Gs induced by the β2 adrenergic receptor.

Authors:  Ka Young Chung; Søren G F Rasmussen; Tong Liu; Sheng Li; Brian T DeVree; Pil Seok Chae; Diane Calinski; Brian K Kobilka; Virgil L Woods; Roger K Sunahara
Journal:  Nature       Date:  2011-09-28       Impact factor: 49.962

2.  Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization.

Authors:  Mikyung Kim; Zhen-Yu J Sun; Kasper D Rand; Xiaomeng Shi; Likai Song; Yuxing Cheng; Amr F Fahmy; Shreoshi Majumdar; Gilad Ofek; Yongping Yang; Peter D Kwong; Jia-Huai Wang; John R Engen; Gerhard Wagner; Ellis L Reinherz
Journal:  Nat Struct Mol Biol       Date:  2011-10-16       Impact factor: 15.369

3.  Conformational differences between arrestin2 and pre-activated mutants as revealed by hydrogen exchange mass spectrometry.

Authors:  Jennifer M Carter; Vsevolod V Gurevich; Eric R Prossnitz; John R Engen
Journal:  J Mol Biol       Date:  2005-08-26       Impact factor: 5.469

4.  Different conformational dynamics of various active states of β-arrestin1 analyzed by hydrogen/deuterium exchange mass spectrometry.

Authors:  Dong Kyun Kim; Youngjoo Yun; Hee Ryung Kim; Min-Duk Seo; Ka Young Chung
Journal:  J Struct Biol       Date:  2015-04-11       Impact factor: 2.867

Review 5.  Hydrogen exchange mass spectrometry: are we out of the quicksand?

Authors:  Roxana E Iacob; John R Engen
Journal:  J Am Soc Mass Spectrom       Date:  2012-04-03       Impact factor: 3.109

6.  Effective application of bicelles for conformational analysis of G protein-coupled receptors by hydrogen/deuterium exchange mass spectrometry.

Authors:  Nguyen Minh Duc; Yang Du; Cheng Zhang; Su Youn Lee; Thor S Thorsen; Brian K Kobilka; Ka Young Chung
Journal:  J Am Soc Mass Spectrom       Date:  2015-03-05       Impact factor: 3.109

7.  Protein conformation ensembles monitored by HDX reveal a structural rationale for abscisic acid signaling protein affinities and activities.

Authors:  Graham M West; Bruce D Pascal; Ley-Moy Ng; Fen-Fen Soon; Karsten Melcher; H Eric Xu; Michael J Chalmers; Patrick R Griffin
Journal:  Structure       Date:  2013-01-03       Impact factor: 5.006

8.  Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange.

Authors:  Xi Zhang; Ellen Y T Chien; Michael J Chalmers; Bruce D Pascal; Jovylyn Gatchalian; Raymond C Stevens; Patrick R Griffin
Journal:  Anal Chem       Date:  2010-02-01       Impact factor: 6.986

Review 9.  Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

Authors:  Gregory F Pirrone; Roxana E Iacob; John R Engen
Journal:  Anal Chem       Date:  2014-11-14       Impact factor: 6.986

10.  Molecular determinants of PI3Kγ-mediated activation downstream of G-protein-coupled receptors (GPCRs).

Authors:  Oscar Vadas; Hashem A Dbouk; Aliaksei Shymanets; Olga Perisic; John E Burke; Widian F Abi Saab; Bassem D Khalil; Christian Harteneck; Anne R Bresnick; Bernd Nürnberg; Jonathan M Backer; Roger L Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

View more
  21 in total

1.  Probing Protein-Membrane Interactions and Dynamics Using Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS).

Authors:  Jordan T B Stariha; Reece M Hoffmann; David J Hamelin; John E Burke
Journal:  Methods Mol Biol       Date:  2021

2.  Accurate Prediction of Amide Exchange in the Fast Limit Reveals Thrombin Allostery.

Authors:  Phineus R L Markwick; Riley B Peacock; Elizabeth A Komives
Journal:  Biophys J       Date:  2018-11-24       Impact factor: 4.033

3.  Novel K-Ras G12C Switch-II Covalent Binders Destabilize Ras and Accelerate Nucleotide Exchange.

Authors:  Chimno I Nnadi; Meredith L Jenkins; Daniel R Gentile; Leslie A Bateman; Daniel Zaidman; Trent E Balius; Daniel K Nomura; John E Burke; Kevan M Shokat; Nir London
Journal:  J Chem Inf Model       Date:  2018-01-31       Impact factor: 4.956

Review 4.  Mass Spectrometry-Based Protein Footprinting for Higher-Order Structure Analysis: Fundamentals and Applications.

Authors:  Xiaoran Roger Liu; Mengru Mira Zhang; Michael L Gross
Journal:  Chem Rev       Date:  2020-04-22       Impact factor: 60.622

Review 5.  Bridging protein structure, dynamics, and function using hydrogen/deuterium-exchange mass spectrometry.

Authors:  Edgar A Hodge; Mark A Benhaim; Kelly K Lee
Journal:  Protein Sci       Date:  2019-11-25       Impact factor: 6.725

6.  Assembly of a GPCR-G Protein Complex.

Authors:  Yang Du; Nguyen Minh Duc; Søren G F Rasmussen; Daniel Hilger; Xavier Kubiak; Liwen Wang; Jennifer Bohon; Hee Ryung Kim; Marcin Wegrecki; Awuri Asuru; Kyung Min Jeong; Jeongmi Lee; Mark R Chance; David T Lodowski; Brian K Kobilka; Ka Young Chung
Journal:  Cell       Date:  2019-05-09       Impact factor: 41.582

7.  Conformational disruption of PI3Kδ regulation by immunodeficiency mutations in PIK3CD and PIK3R1.

Authors:  Gillian L Dornan; Braden D Siempelkamp; Meredith L Jenkins; Oscar Vadas; Carrie L Lucas; John E Burke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

Review 8.  Integrative modelling of cellular assemblies.

Authors:  Agnel Praveen Joseph; Guido Polles; Frank Alber; Maya Topf
Journal:  Curr Opin Struct Biol       Date:  2017-07-20       Impact factor: 6.809

9.  Defining Hsp33's Redox-regulated Chaperone Activity and Mapping Conformational Changes on Hsp33 Using Hydrogen-deuterium Exchange Mass Spectrometry.

Authors:  Rosi Fassler; Nufar Edinger; Oded Rimon; Dana Reichmann
Journal:  J Vis Exp       Date:  2018-06-07       Impact factor: 1.355

10.  Mechanism of parkin activation by PINK1.

Authors:  Christina Gladkova; Sarah L Maslen; J Mark Skehel; David Komander
Journal:  Nature       Date:  2018-06-06       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.