Literature DB >> 22476891

Hydrogen exchange mass spectrometry: are we out of the quicksand?

Roxana E Iacob1, John R Engen.   

Abstract

Although the use of hydrogen exchange (HX) mass spectrometry (MS) to study proteins and protein conformation is now over 20 years old, the perception lingers that it still has "issues." Is this method, in fact, still in the quicksand with many remaining obstacles to overcome? We do not think so. This critical insight addresses the "issues" and explores several broad questions including, have the limitations of HX MS been surmounted and has HX MS achieved "indispensable" status in the pantheon of protein structural analysis tools.

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Year:  2012        PMID: 22476891      PMCID: PMC3389995          DOI: 10.1007/s13361-012-0377-z

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  91 in total

1.  Supercritical fluid chromatography reduction of hydrogen/deuterium back exchange in solution-phase hydrogen/deuterium exchange with mass spectrometric analysis.

Authors:  Mark R Emmett; Sasa Kazazic; Alan G Marshall; Wei Chen; Stone D-H Shi; Ben Bolaños; Michael J Greig
Journal:  Anal Chem       Date:  2006-10-01       Impact factor: 6.986

2.  The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies.

Authors:  Damian Houde; Steven A Berkowitz; John R Engen
Journal:  J Pharm Sci       Date:  2010-12-29       Impact factor: 3.534

3.  Assessment of the repeatability and reproducibility of hydrogen/deuterium exchange mass spectrometry measurements.

Authors:  William Burkitt; Gavin O'Connor
Journal:  Rapid Commun Mass Spectrom       Date:  2008-12       Impact factor: 2.419

4.  Thermal denaturation of Escherichia coli thioredoxin studied by hydrogen/deuterium exchange and electrospray ionization mass spectrometry: monitoring a two-state protein unfolding transition.

Authors:  C S Maier; M I Schimerlik; M L Deinzer
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

5.  Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry.

Authors:  D L Smith; Y Deng; Z Zhang
Journal:  J Mass Spectrom       Date:  1997-02       Impact factor: 1.982

Review 6.  Investigation of protein folding by mass spectrometry.

Authors:  A Miranker; C V Robinson; S E Radford; C M Dobson
Journal:  FASEB J       Date:  1996-01       Impact factor: 5.191

Review 7.  Principles that determine the structure of proteins.

Authors:  C Chothia
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

8.  Hydrogen/deuterium exchange mass spectrometry.

Authors:  Xuguang Yan; Claudia S Maier
Journal:  Methods Mol Biol       Date:  2009

9.  Evaluating the roles of thrombin and calcium in the activation of coagulation factor XIII using H/D exchange and MALDI-TOF MS.

Authors:  Brian T Turner; Muriel C Maurer
Journal:  Biochemistry       Date:  2002-06-25       Impact factor: 3.162

10.  Ion mobility adds an additional dimension to mass spectrometric analysis of solution-phase hydrogen/deuterium exchange.

Authors:  Roxana E Iacob; James P Murphy; John R Engen
Journal:  Rapid Commun Mass Spectrom       Date:  2008-09       Impact factor: 2.586

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  43 in total

1.  Noncanonical role of the PDZ4 domain of the adaptor protein PDZK1 in the regulation of the hepatic high density lipoprotein receptor scavenger receptor class B, type I (SR-BI).

Authors:  Kosuke Tsukamoto; Thomas E Wales; Kathleen Daniels; Rinku Pal; Ren Sheng; Wonhwa Cho; Walter Stafford; John R Engen; Monty Krieger; Olivier Kocher
Journal:  J Biol Chem       Date:  2013-05-17       Impact factor: 5.157

2.  Time-resolved pulsed hydrogen/deuterium exchange mass spectrometry probes gaseous proteins structural kinetics.

Authors:  Khadijeh Rajabi
Journal:  J Am Soc Mass Spectrom       Date:  2014-10-16       Impact factor: 3.109

Review 3.  Analytical Aspects of Hydrogen Exchange Mass Spectrometry.

Authors:  John R Engen; Thomas E Wales
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2015-05-29       Impact factor: 10.745

4.  Replication in bioanalytical studies with HDX MS: aim as high as possible.

Authors:  Jamie A Moroco; John R Engen
Journal:  Bioanalysis       Date:  2015       Impact factor: 2.681

5.  Electron-capture dissociation and ion mobility mass spectrometry for characterization of the hemoglobin protein assembly.

Authors:  Weidong Cui; Hao Zhang; Robert E Blankenship; Michael L Gross
Journal:  Protein Sci       Date:  2015-07-15       Impact factor: 6.725

6.  Protein structural dynamics at the gas/water interface examined by hydrogen exchange mass spectrometry.

Authors:  Yiming Xiao; Lars Konermann
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

7.  Microdroplet fusion mass spectrometry for fast reaction kinetics.

Authors:  Jae Kyoo Lee; Samuel Kim; Hong Gil Nam; Richard N Zare
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-16       Impact factor: 11.205

8.  Nepenthesin from monkey cups for hydrogen/deuterium exchange mass spectrometry.

Authors:  Martial Rey; Menglin Yang; Kyle M Burns; Yaping Yu; Susan P Lees-Miller; David C Schriemer
Journal:  Mol Cell Proteomics       Date:  2012-11-29       Impact factor: 5.911

9.  Hydrogen exchange-mass spectrometry measures stapled peptide conformational dynamics and predicts pharmacokinetic properties.

Authors:  Xiangguo Eric Shi; Thomas E Wales; Carl Elkin; Noriyuki Kawahata; John R Engen; D Allen Annis
Journal:  Anal Chem       Date:  2013-11-14       Impact factor: 6.986

10.  Characterization of Aggregation Propensity of a Human Fc-Fusion Protein Therapeutic by Hydrogen/Deuterium Exchange Mass Spectrometry.

Authors:  Richard Y-C Huang; Roxana E Iacob; Stanley R Krystek; Mi Jin; Hui Wei; Li Tao; Tapan K Das; Adrienne A Tymiak; John R Engen; Guodong Chen
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-15       Impact factor: 3.109

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