Literature DB >> 20058880

Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange.

Xi Zhang1, Ellen Y T Chien, Michael J Chalmers, Bruce D Pascal, Jovylyn Gatchalian, Raymond C Stevens, Patrick R Griffin.   

Abstract

To examine the molecular details of ligand activation of G-protein coupled receptors (GPCRs), emphasis has been placed on structure determination of these receptors with stabilizing ligands. Here we present the methodology for receptor dynamics characterization of the GPCR human beta(2) adrenergic receptor bound to the inverse agonist carazolol using the technique of amide hydrogen/deuterium exchange coupled with mass spectrometry (HDX MS). The HDX MS profile of receptor bound to carazolol is consistent with thermal parameter observations in the crystal structure and provides additional information in highly dynamic regions of the receptor and chemical modifications demonstrating the highly complementary nature of the techniques. After optimization of HDX experimental conditions for this membrane protein, better than 89% sequence coverage was obtained for the receptor. The methodology presented paves the way for future analysis of beta(2)AR bound to pharmacologically distinct ligands as well as analysis of other GPCR family members.

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Year:  2010        PMID: 20058880      PMCID: PMC2829980          DOI: 10.1021/ac902484p

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  38 in total

1.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

Review 2.  How membranes shape protein structure.

Authors:  S H White; A S Ladokhin; S Jayasinghe; K Hristova
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

Review 3.  Detergents as tools in membrane biochemistry.

Authors:  R M Garavito; S Ferguson-Miller
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

4.  Investigating protein structure and dynamics by hydrogen exchange MS.

Authors:  J R Engen; D L Smith
Journal:  Anal Chem       Date:  2001-05-01       Impact factor: 6.986

Review 5.  G-protein-coupled receptors at a glance.

Authors:  Wesley K Kroeze; Douglas J Sheffler; Bryan L Roth
Journal:  J Cell Sci       Date:  2003-12-15       Impact factor: 5.285

Review 6.  Development of new methodologies for the mass spectrometry study of bioorganic macromolecules.

Authors:  Simone Cristoni; Luigi Rossi Bernardi
Journal:  Mass Spectrom Rev       Date:  2003 Nov-Dec       Impact factor: 10.946

7.  Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.

Authors:  Laetitia Cravello; David Lascoux; Eric Forest
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

8.  Ubiquitination of G-protein-coupled receptors.

Authors:  Adriano Marchese; Jeffrey L Benovic
Journal:  Methods Mol Biol       Date:  2004

9.  Structure of bovine rhodopsin in a trigonal crystal form.

Authors:  Jade Li; Patricia C Edwards; Manfred Burghammer; Claudio Villa; Gebhard F X Schertler
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

10.  Hydrogen/deuterium exchange and mass spectrometric analysis of a protein containing multiple disulfide bonds: Solution structure of recombinant macrophage colony stimulating factor-beta (rhM-CSFbeta).

Authors:  Xuguang Yan; Heidi Zhang; Jeffrey Watson; Michael I Schimerlik; Max L Deinzer
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

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  50 in total

1.  Validation of membrane protein topology models by oxidative labeling and mass spectrometry.

Authors:  Yan Pan; Xiang Ruan; Miguel A Valvano; Lars Konermann
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-13       Impact factor: 3.109

2.  Conformational dynamics of the bovine mitochondrial ADP/ATP carrier isoform 1 revealed by hydrogen/deuterium exchange coupled to mass spectrometry.

Authors:  Martial Rey; Petr Man; Benjamin Clémençon; Véronique Trézéguet; Gérard Brandolin; Eric Forest; Ludovic Pelosi
Journal:  J Biol Chem       Date:  2010-08-30       Impact factor: 5.157

3.  Conformational changes in the G protein Gs induced by the β2 adrenergic receptor.

Authors:  Ka Young Chung; Søren G F Rasmussen; Tong Liu; Sheng Li; Brian T DeVree; Pil Seok Chae; Diane Calinski; Brian K Kobilka; Virgil L Woods; Roger K Sunahara
Journal:  Nature       Date:  2011-09-28       Impact factor: 49.962

4.  Hydrogen/Deuterium Exchange Mass Spectrometry of Human Green Opsin Reveals a Conserved Pro-Pro Motif in Extracellular Loop 2 of Monostable Visual G Protein-Coupled Receptors.

Authors:  Lukas Hofmann; Nathan S Alexander; Wenyu Sun; Jianye Zhang; Tivadar Orban; Krzysztof Palczewski
Journal:  Biochemistry       Date:  2017-04-21       Impact factor: 3.162

Review 5.  Hydrogen-deuterium exchange mass spectrometry of membrane proteins in lipid nanodiscs.

Authors:  Michelle Redhair; Amanda F Clouser; William M Atkins
Journal:  Chem Phys Lipids       Date:  2019-02-22       Impact factor: 3.329

Review 6.  Integrating mass spectrometry of intact protein complexes into structural proteomics.

Authors:  Suk-Joon Hyung; Brandon T Ruotolo
Journal:  Proteomics       Date:  2012-05       Impact factor: 3.984

7.  Time window expansion for HDX analysis of an intrinsically disordered protein.

Authors:  Devrishi Goswami; Srikripa Devarakonda; Michael J Chalmers; Bruce D Pascal; Bruce M Spiegelman; Patrick R Griffin
Journal:  J Am Soc Mass Spectrom       Date:  2013-07-25       Impact factor: 3.109

8.  Monitoring protein conformational changes and dynamics using stable-isotope labeling and mass spectrometry.

Authors:  Alem W Kahsai; Sudarshan Rajagopal; Jinpeng Sun; Kunhong Xiao
Journal:  Nat Protoc       Date:  2014-05-08       Impact factor: 13.491

9.  Improving yields of deuterated, methyl labeled protein by growing in H2O.

Authors:  Evan S O'Brien; Danny W Lin; Brian Fuglestad; Matthew A Stetz; Travis Gosse; Cecilia Tommos; A Joshua Wand
Journal:  J Biomol NMR       Date:  2018-08-02       Impact factor: 2.835

10.  Organic Solvents for Enhanced Proteolysis of Stable Proteins for Hydrogen-Deuterium Exchange Mass Spectrometry.

Authors:  Chunyang Guo; Lindsey K Steinberg; Jeffrey P Henderson; Michael L Gross
Journal:  Anal Chem       Date:  2020-08-12       Impact factor: 6.986

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