Literature DB >> 27549410

The entangled history of animal and plant microRNAs.

Rodrigo S Reis1.   

Abstract

MicroRNAs (miRNAs) are small RNAs (sRNAs) that regulate gene expression in development and adaptive responses to the environment. The early days in the sRNA field was one of the most exciting and promising moments in modern biology, attracting large investments to the understanding of the underlining mechanisms and their applications, such as in gene therapy. miRNAs and other sRNAs have since been extensively studied in animals and plants, and are currently well established as an important part of most gene regulatory processes in animals and as master regulators in plants. Here, this review presents the critical discoveries and early misconceptions that shaped our current understanding of RNA silencing by miRNAs in most eukaryotes, with a focus on plant miRNAs. The presentation and language used are simple to facilitate a clear comprehension by researchers and students from various backgrounds. Hence, this is a valuable teaching tool and should also draw attention to the discovery processes themselves, such that scientists from various fields can gain insights from the successful and rapidly evolving miRNA field.

Keywords:  Argonaute; Dicer; Gene silencing; RDR; Small RNA; microRNA

Mesh:

Substances:

Year:  2016        PMID: 27549410     DOI: 10.1007/s10142-016-0513-0

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  86 in total

Review 1.  Post-transcriptional gene silencing across kingdoms.

Authors:  C Cogoni; G Macino
Journal:  Curr Opin Genet Dev       Date:  2000-12       Impact factor: 5.578

2.  Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference.

Authors:  S Parrish; J Fleenor; S Xu; C Mello; A Fire
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

Review 3.  The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis.

Authors:  Michelle A Carmell; Zhenyu Xuan; Michael Q Zhang; Gregory J Hannon
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

4.  MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms.

Authors:  Yan Zeng; Rui Yi; Bryan R Cullen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

5.  EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans.

Authors:  A Smardon; J M Spoerke; S C Stacey; M E Klein; N Mackin; E M Maine
Journal:  Curr Biol       Date:  2000-02-24       Impact factor: 10.834

6.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

Review 7.  Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants.

Authors:  Basel Khraiwesh; Jian-Kang Zhu; Jianhua Zhu
Journal:  Biochim Biophys Acta       Date:  2011-05-13

8.  Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase.

Authors:  Fabián E Vaistij; Louise Jones; David C Baulcombe
Journal:  Plant Cell       Date:  2002-04       Impact factor: 11.277

9.  Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.

Authors:  Cesar Llave; Zhixin Xie; Kristin D Kasschau; James C Carrington
Journal:  Science       Date:  2002-09-20       Impact factor: 47.728

10.  Methylation as a crucial step in plant microRNA biogenesis.

Authors:  Bin Yu; Zhiyong Yang; Junjie Li; Svetlana Minakhina; Maocheng Yang; Richard W Padgett; Ruth Steward; Xuemei Chen
Journal:  Science       Date:  2005-02-11       Impact factor: 47.728

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  5 in total

1.  Degradation of Fungal MicroRNAs Triggered by Short Tandem Target Mimics Is via the Small-RNA-Degrading Nuclease.

Authors:  Yulong Wang; Zhangxun Wang; Wenjing Yang; Xiangyun Xie; Haiyan Cheng; Li Qin; Guiliang Tang; Bo Huang
Journal:  Appl Environ Microbiol       Date:  2019-04-18       Impact factor: 4.792

2.  RNAs: dynamic and mutable.

Authors:  Mihaela Zavolan; Brenton R Graveley
Journal:  Genome Biol       Date:  2017-11-29       Impact factor: 13.583

3.  Construction and analysis of degradome-dependent microRNA regulatory networks in soybean.

Authors:  Rui Wang; Zhongyi Yang; Yuhan Fei; Jiejie Feng; Hui Zhu; Fang Huang; Hongsheng Zhang; Ji Huang
Journal:  BMC Genomics       Date:  2019-06-28       Impact factor: 3.969

4.  mRNA-seq and miRNA-seq profiling analyses reveal molecular mechanisms regulating induction of fruiting body in Ophiocordyceps sinensis.

Authors:  Han Zhang; Pan Yue; Xinxin Tong; Jing Bai; Jingyan Yang; Jinlin Guo
Journal:  Sci Rep       Date:  2021-06-21       Impact factor: 4.379

Review 5.  Evolution of RNA- and DNA-guided antivirus defense systems in prokaryotes and eukaryotes: common ancestry vs convergence.

Authors:  Eugene V Koonin
Journal:  Biol Direct       Date:  2017-02-10       Impact factor: 4.540

  5 in total

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