Literature DB >> 27546610

Protein adsorption on nanoparticles: model development using computer simulation.

Qing Shao1, Carol K Hall.   

Abstract

The adsorption of proteins on nanoparticles results in the formation of the protein corona, the composition of which determines how nanoparticles influence their biological surroundings. We seek to better understand corona formation by developing models that describe protein adsorption on nanoparticles using computer simulation results as data. Using a coarse-grained protein model, discontinuous molecular dynamics simulations are conducted to investigate the adsorption of two small proteins (Trp-cage and WW domain) on a model nanoparticle of diameter 10.0 nm at protein concentrations ranging from 0.5 to 5 mM. The resulting adsorption isotherms are well described by the Langmuir, Freundlich, Temkin and Kiselev models, but not by the Elovich, Fowler-Guggenheim and Hill-de Boer models. We also try to develop a generalized model that can describe protein adsorption equilibrium on nanoparticles of different diameters in terms of dimensionless size parameters. The simulation results for three proteins (Trp-cage, WW domain, and GB3) on four nanoparticles (diameter  =  5.0, 10.0, 15.0, and 20.0 nm) illustrate both the promise and the challenge associated with developing generalized models of protein adsorption on nanoparticles.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27546610      PMCID: PMC5559717          DOI: 10.1088/0953-8984/28/41/414019

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  22 in total

Review 1.  Review and analysis of molecular simulations of methane, hydrogen, and acetylene storage in metal-organic frameworks.

Authors:  Rachel B Getman; Youn-Sang Bae; Christopher E Wilmer; Randall Q Snurr
Journal:  Chem Rev       Date:  2011-12-21       Impact factor: 60.622

2.  Protein--nanoparticle interaction: identification of the ubiquitin--gold nanoparticle interaction site.

Authors:  Luigi Calzolai; Fabio Franchini; Douglas Gilliland; François Rossi
Journal:  Nano Lett       Date:  2010-08-11       Impact factor: 11.189

3.  Coarse-grained model of adsorption of blood plasma proteins onto nanoparticles.

Authors:  Hender Lopez; Vladimir Lobaskin
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

4.  Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles.

Authors:  Tommy Cedervall; Iseult Lynch; Stina Lindman; Tord Berggård; Eva Thulin; Hanna Nilsson; Kenneth A Dawson; Sara Linse
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

5.  Adsorption of basic dye on high-surface-area activated carbon prepared from coconut husk: equilibrium, kinetic and thermodynamic studies.

Authors:  I A W Tan; A L Ahmad; B H Hameed
Journal:  J Hazard Mater       Date:  2007-10-13       Impact factor: 10.588

6.  Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces.

Authors:  D Horinek; A Serr; M Geisler; T Pirzer; U Slotta; S Q Lud; J A Garrido; T Scheibel; T Hugel; R R Netz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-20       Impact factor: 11.205

7.  Exhaustively sampling peptide adsorption with metadynamics.

Authors:  Michael Deighan; Jim Pfaendtner
Journal:  Langmuir       Date:  2013-06-13       Impact factor: 3.882

8.  Protein adsorption on surfaces with grafted polymers: a theoretical approach.

Authors:  I Szleifer
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

9.  Computational and experimental characterizations of silver nanoparticle-apolipoprotein biocorona.

Authors:  Rongzhong Li; Ran Chen; Pengyu Chen; Yimei Wen; Pu Chun Ke; Samuel S Cho
Journal:  J Phys Chem B       Date:  2013-10-16       Impact factor: 2.991

10.  Adsorption of polar and nonpolar organic chemicals to carbon nanotubes.

Authors:  Wei Chen; Lin Duan; Dongqiang Zhu
Journal:  Environ Sci Technol       Date:  2007-12-15       Impact factor: 9.028

View more
  7 in total

1.  NanoEHS beyond Toxicity - Focusing on Biocorona.

Authors:  Sijie Lin; Monika Mortimer; Ran Chen; Aleksandr Kakinen; Jim E Riviere; Thomas P Davis; Feng Ding; Pu Chun Ke
Journal:  Environ Sci Nano       Date:  2017-06-01

2.  A hard-sphere model of protein corona formation on spherical and cylindrical nanoparticles.

Authors:  Ian Rouse; Vladimir Lobaskin
Journal:  Biophys J       Date:  2021-09-08       Impact factor: 3.699

Review 3.  Molecular Modeling of Protein Corona Formation and Its Interactions with Nanoparticles and Cell Membranes for Nanomedicine Applications.

Authors:  Hwankyu Lee
Journal:  Pharmaceutics       Date:  2021-04-29       Impact factor: 6.321

4.  Role of Ligand Conformation on Nanoparticle-Protein Interactions.

Authors:  Federica Simonelli; Giulia Rossi; Luca Monticelli
Journal:  J Phys Chem B       Date:  2019-02-14       Impact factor: 2.991

5.  Mathematical modeling in cancer nanomedicine: a review.

Authors:  Prashant Dogra; Joseph D Butner; Yao-Li Chuang; Sergio Caserta; Shreya Goel; C Jeffrey Brinker; Vittorio Cristini; Zhihui Wang
Journal:  Biomed Microdevices       Date:  2019-04-04       Impact factor: 2.838

Review 6.  Mechanistic Understanding From Molecular Dynamics Simulation in Pharmaceutical Research 1: Drug Delivery.

Authors:  Alex Bunker; Tomasz Róg
Journal:  Front Mol Biosci       Date:  2020-11-25

7.  Effect of dopamine-functionalization, charge and pH on protein corona formation around TiO2 nanoparticles.

Authors:  Paulo Siani; Cristiana Di Valentin
Journal:  Nanoscale       Date:  2022-03-31       Impact factor: 7.790

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.