Literature DB >> 27543336

Tandem duplications contribute to not one but two distinct phenotypes.

Johnathan Watkins1, Andrew Tutt2, Anita Grigoriadis3.   

Abstract

Mesh:

Year:  2016        PMID: 27543336      PMCID: PMC5018800          DOI: 10.1073/pnas.1610228113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  9 in total

1.  The role of tandem duplicator phenotype in tumour evolution in high-grade serous ovarian cancer.

Authors:  Charlotte K Y Ng; Susanna L Cooke; Kevin Howe; Scott Newman; Jian Xian; Jillian Temple; Elizabeth M Batty; Jessica C M Pole; Simon P Langdon; Paul A W Edwards; James D Brenton
Journal:  J Pathol       Date:  2012-02-09       Impact factor: 7.996

2.  Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications.

Authors:  Tatiana Popova; Elodie Manié; Valentina Boeva; Aude Battistella; Oumou Goundiam; Nicholas K Smith; Christopher R Mueller; Virginie Raynal; Odette Mariani; Xavier Sastre-Garau; Marc-Henri Stern
Journal:  Cancer Res       Date:  2016-01-19       Impact factor: 12.701

3.  Allele-specific copy number analysis of tumors.

Authors:  Peter Van Loo; Silje H Nordgard; Ole Christian Lingjærde; Hege G Russnes; Inga H Rye; Wei Sun; Victor J Weigman; Peter Marynen; Anders Zetterberg; Bjørn Naume; Charles M Perou; Anne-Lise Børresen-Dale; Vessela N Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

4.  The tandem duplicator phenotype as a distinct genomic configuration in cancer.

Authors:  Francesca Menghi; Koichiro Inaki; XingYi Woo; Pooja A Kumar; Krzysztof R Grzeda; Ankit Malhotra; Vinod Yadav; Hyunsoo Kim; Eladio J Marquez; Duygu Ucar; Phung T Shreckengast; Joel P Wagner; George MacIntyre; Krishna R Murthy Karuturi; Ralph Scully; James Keck; Jeffrey H Chuang; Edison T Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-07       Impact factor: 11.205

5.  Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.

Authors:  David J McBride; Dariush Etemadmoghadam; Susanna L Cooke; Kathryn Alsop; Joshy George; Adam Butler; Juok Cho; Danushka Galappaththige; Chris Greenman; Karen D Howarth; King W Lau; Charlotte K Ng; Keiran Raine; Jon Teague; David C Wedge; Australian Ovarian Cancer Study Group; Xavier Caubit; Michael R Stratton; James D Brenton; Peter J Campbell; P Andrew Futreal; David Dl Bowtell
Journal:  J Pathol       Date:  2012-07-02       Impact factor: 7.996

6.  Robust BRCA1-like classification of copy number profiles of samples repeated across different datasets and platforms.

Authors:  Philip C Schouten; Anita Grigoriadis; Thomas Kuilman; Hasan Mirza; Johnathan A Watkins; Saskia A Cooke; Ewald van Dyk; Tesa M Severson; Oscar M Rueda; Marlous Hoogstraat; Caroline V M Verhagen; Rachael Natrajan; Suet-Feung Chin; Esther H Lips; Janneke Kruizinga; Arno Velds; Marja Nieuwland; Ron M Kerkhoven; Oscar Krijgsman; Conchita Vens; Daniel Peeper; Petra M Nederlof; Carlos Caldas; Andrew N Tutt; Lodewyk F Wessels; Sabine C Linn
Journal:  Mol Oncol       Date:  2015-03-20       Impact factor: 6.603

7.  Comprehensive molecular portraits of human breast tumours.

Authors: 
Journal:  Nature       Date:  2012-09-23       Impact factor: 49.962

Review 8.  Genomic scars as biomarkers of homologous recombination deficiency and drug response in breast and ovarian cancers.

Authors:  Johnathan A Watkins; Sheeba Irshad; Anita Grigoriadis; Andrew N J Tutt
Journal:  Breast Cancer Res       Date:  2014-06-03       Impact factor: 6.466

9.  Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Authors:  Serena Nik-Zainal; Helen Davies; Johan Staaf; Manasa Ramakrishna; Dominik Glodzik; Xueqing Zou; Inigo Martincorena; Ludmil B Alexandrov; Sancha Martin; David C Wedge; Peter Van Loo; Young Seok Ju; Marcel Smid; Arie B Brinkman; Sandro Morganella; Miriam R Aure; Ole Christian Lingjærde; Anita Langerød; Markus Ringnér; Sung-Min Ahn; Sandrine Boyault; Jane E Brock; Annegien Broeks; Adam Butler; Christine Desmedt; Luc Dirix; Serge Dronov; Aquila Fatima; John A Foekens; Moritz Gerstung; Gerrit K J Hooijer; Se Jin Jang; David R Jones; Hyung-Yong Kim; Tari A King; Savitri Krishnamurthy; Hee Jin Lee; Jeong-Yeon Lee; Yilong Li; Stuart McLaren; Andrew Menzies; Ville Mustonen; Sarah O'Meara; Iris Pauporté; Xavier Pivot; Colin A Purdie; Keiran Raine; Kamna Ramakrishnan; F Germán Rodríguez-González; Gilles Romieu; Anieta M Sieuwerts; Peter T Simpson; Rebecca Shepherd; Lucy Stebbings; Olafur A Stefansson; Jon Teague; Stefania Tommasi; Isabelle Treilleux; Gert G Van den Eynden; Peter Vermeulen; Anne Vincent-Salomon; Lucy Yates; Carlos Caldas; Laura van't Veer; Andrew Tutt; Stian Knappskog; Benita Kiat Tee Tan; Jos Jonkers; Åke Borg; Naoto T Ueno; Christos Sotiriou; Alain Viari; P Andrew Futreal; Peter J Campbell; Paul N Span; Steven Van Laere; Sunil R Lakhani; Jorunn E Eyfjord; Alastair M Thompson; Ewan Birney; Hendrik G Stunnenberg; Marc J van de Vijver; John W M Martens; Anne-Lise Børresen-Dale; Andrea L Richardson; Gu Kong; Gilles Thomas; Michael R Stratton
Journal:  Nature       Date:  2016-05-02       Impact factor: 49.962

  9 in total
  5 in total

1.  Reply to Watkins et al.: Whole-genome sequencing-based identification of diverse tandem duplicator phenotypes in human cancers.

Authors:  Francesca Menghi; Edison T Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-19       Impact factor: 11.205

2.  A survey of cancer genome signatures identifies genes connected to distinct chromosomal instability phenotypes.

Authors:  Manar S Shafat; Eamaan S Rufaie; Johnathan Watkins
Journal:  Pharmacogenomics J       Date:  2021-03-17       Impact factor: 3.550

Review 3.  Influence of domestication on specialized metabolic pathways in fruit crops.

Authors:  M Saleem Dar; Bhushan B Dholakia; Abhijeet P Kulkarni; Pranjali S Oak; Dhanasekaran Shanmugam; Vidya S Gupta; Ashok P Giri
Journal:  Planta       Date:  2021-02-04       Impact factor: 4.116

4.  Mechanism of tandem duplication formation in BRCA1-mutant cells.

Authors:  Nicholas A Willis; Richard L Frock; Francesca Menghi; Erin E Duffey; Arvind Panday; Virginia Camacho; E Paul Hasty; Edison T Liu; Frederick W Alt; Ralph Scully
Journal:  Nature       Date:  2017-11-22       Impact factor: 49.962

5.  Evaluation of CDK12 Protein Expression as a Potential Novel Biomarker for DNA Damage Response-Targeted Therapies in Breast Cancer.

Authors:  Kalnisha Naidoo; Patty T Wai; Sarah L Maguire; Frances Daley; Syed Haider; Divya Kriplani; James Campbell; Hasan Mirza; Anita Grigoriadis; Andrew Tutt; Paul M Moseley; Tarek M A Abdel-Fatah; Stephen Y T Chan; Srinivasan Madhusudan; Emad A Rhaka; Ian O Ellis; Christopher J Lord; Yinyin Yuan; Andrew R Green; Rachael Natrajan
Journal:  Mol Cancer Ther       Date:  2017-11-13       Impact factor: 6.261

  5 in total

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