Literature DB >> 27542508

Following Optogenetic Dimerizers and Quantitative Prospects.

Jacqueline Niu1, Manu Ben Johny2, Ivy E Dick3, Takanari Inoue4.   

Abstract

Optogenetics describes the use of genetically encoded photosensitive proteins to direct intended biological processes with light in recombinant and native systems. While most of these light-responsive proteins were originally discovered in photosynthetic organisms, the past few decades have been punctuated by experiments that not only commandeer but also engineer and enhance these natural tools to explore a wide variety of physiological questions. In addition, the ability to tune dynamic range and kinetic rates of optogenetic actuators is a challenging question that is heavily explored with computational methods devised to facilitate optimization of these systems. Here, we explain the basic mechanisms of a few popular photodimerizing optogenetic systems, discuss applications, compare optogenetic tools against more traditional chemical methods, and propose a simple quantitative understanding of how actuators exert their influence on targeted processes.
Copyright © 2016. Published by Elsevier Inc.

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Year:  2016        PMID: 27542508      PMCID: PMC5034304          DOI: 10.1016/j.bpj.2016.07.040

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  89 in total

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Authors:  Adrian Fegan; Brian White; Jonathan C T Carlson; Carston R Wagner
Journal:  Chem Rev       Date:  2010-06-09       Impact factor: 60.622

2.  Multimodal fast optical interrogation of neural circuitry.

Authors:  Feng Zhang; Li-Ping Wang; Martin Brauner; Jana F Liewald; Kenneth Kay; Natalie Watzke; Phillip G Wood; Ernst Bamberg; Georg Nagel; Alexander Gottschalk; Karl Deisseroth
Journal:  Nature       Date:  2007-04-05       Impact factor: 49.962

3.  Channelrhodopsin-2 gene transduced into retinal ganglion cells restores functional vision in genetically blind rats.

Authors:  Hiroshi Tomita; Eriko Sugano; Hitomi Isago; Teru Hiroi; Zhuo Wang; Emi Ohta; Makoto Tamai
Journal:  Exp Eye Res       Date:  2009-12-27       Impact factor: 3.467

Review 4.  Macromolecular modeling with rosetta.

Authors:  Rhiju Das; David Baker
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

5.  Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.

Authors:  E Huala; P W Oeller; E Liscum; I S Han; E Larsen; W R Briggs
Journal:  Science       Date:  1997-12-19       Impact factor: 47.728

6.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

7.  A LOV2 domain-based optogenetic tool to control protein degradation and cellular function.

Authors:  Christian Renicke; Daniel Schuster; Svetlana Usherenko; Lars-Oliver Essen; Christof Taxis
Journal:  Chem Biol       Date:  2013-04-18

8.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Optogenetic Control of Gene Expression in Drosophila.

Authors:  Yick-Bun Chan; Olga V Alekseyenko; Edward A Kravitz
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

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  10 in total

Review 1.  Optochemical Control of Biological Processes in Cells and Animals.

Authors:  Nicholas Ankenbruck; Taylor Courtney; Yuta Naro; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2018-02-01       Impact factor: 15.336

2.  A Chemically Disrupted Proximity System for Controlling Dynamic Cellular Processes.

Authors:  Daniel Cunningham-Bryant; Emily M Dieter; Glenna W Foight; John C Rose; Dana E Loutey; Dustin J Maly
Journal:  J Am Chem Soc       Date:  2019-02-14       Impact factor: 15.419

3.  New Biological Frontiers Illuminated by Molecular Sensors and Actuators.

Authors:  Katharina Gaus; Takanari Inoue
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

4.  Flash-and-Freeze: A Novel Technique to Capture Membrane Dynamics with Electron Microscopy.

Authors:  Shuo Li; Sumana Raychaudhuri; Shigeki Watanabe
Journal:  J Vis Exp       Date:  2017-05-01       Impact factor: 1.355

5.  Creating Red Light-Switchable Protein Dimerization Systems as Genetically Encoded Actuators with High Specificity.

Authors:  Zhimin Huang; Zengpeng Li; Xiao Zhang; Shoukai Kang; Runze Dong; Li Sun; Xiaonan Fu; David Vaisar; Kurumi Watanabe; Liangcai Gu
Journal:  ACS Synth Biol       Date:  2020-11-12       Impact factor: 5.110

Review 6.  Light-Induced Dimerization Approaches to Control Cellular Processes.

Authors:  Laura Klewer; Yao-Wen Wu
Journal:  Chemistry       Date:  2019-08-13       Impact factor: 5.236

7.  Spatiotemporal control of phosphatidic acid signaling with optogenetic, engineered phospholipase Ds.

Authors:  Reika Tei; Jeremy M Baskin
Journal:  J Cell Biol       Date:  2020-03-02       Impact factor: 10.539

8.  Computational framework for single-cell spatiotemporal dynamics of optogenetic membrane recruitment.

Authors:  Ivan A Kuznetsov; Erin E Berlew; Spencer T Glantz; Pimkhuan Hannanta-Anan; Brian Y Chow
Journal:  Cell Rep Methods       Date:  2022-07-06

9.  Spatiotemporal manipulation of ciliary glutamylation reveals its roles in intraciliary trafficking and Hedgehog signaling.

Authors:  Shi-Rong Hong; Cuei-Ling Wang; Yao-Shen Huang; Yu-Chen Chang; Ya-Chu Chang; Ganesh V Pusapati; Chun-Yu Lin; Ning Hsu; Hsiao-Chi Cheng; Yueh-Chen Chiang; Wei-En Huang; Nathan C Shaner; Rajat Rohatgi; Takanari Inoue; Yu-Chun Lin
Journal:  Nat Commun       Date:  2018-04-30       Impact factor: 14.919

10.  Tunable and Photoswitchable Chemically Induced Dimerization for Chemo-optogenetic Control of Protein and Organelle Positioning.

Authors:  Xi Chen; Yao-Wen Wu
Journal:  Angew Chem Int Ed Engl       Date:  2018-05-08       Impact factor: 15.336

  10 in total

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