| Literature DB >> 27529207 |
Abdelsattar M Omar1,2, Mona A Mahran3, Mohini S Ghatge4, Faida H A Bamane5, Mostafa H Ahmed6, Moustafa E El-Araby7,8, Osheiza Abdulmalik9, Martin K Safo10.
Abstract
Hemoglobin (Hb) modifiers that stereospecifically inhibit sickle hemoglobin polymer formation and/or allosterically increase Hb affinity for oxygen have been shown to prevent the primary pathophysiology of sickle cell disease (SCD), specifically, Hb polymerization and red blood cell sickling. Several such compounds are currently being clinically studied for the treatment of SCD. Based on the previously reported non-covalent Hb binding characteristics of substituted aryloxyalkanoic acids that exhibited antisickling properties, we designed, synthesized and evaluated 18 new compounds (KAUS II series) for enhanced antisickling activities. Surprisingly, select test compounds showed no antisickling effects or promoted erythrocyte sickling. Additionally, the compounds showed no significant effect on Hb oxygen affinity (or in some cases, even decreased the affinity for oxygen). The X-ray structure of deoxygenated Hb in complex with a prototype compound, KAUS-23, revealed that the effector bound in the central water cavity of the protein, providing atomic level explanations for the observed functional and biological activities. Although the structural modification did not lead to the anticipated biological effects, the findings provide important direction for designing candidate antisickling agents, as well as a framework for novel Hb allosteric effectors that conversely, decrease the protein affinity for oxygen for potential therapeutic use for hypoxic- and/or ischemic-related diseases.Entities:
Keywords: antisickling; aryloxyalkanoic acids; crystal structure; halogenated benzene; hemoglobin; high affinity; imidazole; low affinity; oxygen equilibrium curve; sickle cell disease
Mesh:
Substances:
Year: 2016 PMID: 27529207 PMCID: PMC5453642 DOI: 10.3390/molecules21081057
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Example of previously studied aryloxyalkanoic acid derivatives.
Figure 2The αTrp14 binding pocket. (a) Binding of two molecules of toluene at the αTrp14 binding pocket of carbonmonoxy Hb (PDB ID: 1R1X). As noted in the text, CFA binds in a similar fashion but the coordinate is not available [27]; (b) Putative binding of KAUS-23 at the Trp14 binding pocket of deoxygenated Hb (PDB ID: 2DN2).
Scheme 1Synthesis of {[2,3-Di/mono substituted-4-(1H-imidazol-2yl)carbonyl]-phenoxy}acetic/butyric acids.
Scheme 2Synthesis of {[2,3-Di/mono substituted-4-(1H-imidazol-2yl)carbonyl]-phenoxy}propionic acids.
Scheme 3Synthesis of 2-[3-chloro-4-(1H-imidazol-2-yl)phenoxy]acetic acid.
Scheme 4Synthesis of 2-[Di/monochloro-4-(1H-imidazol-2-yl)phenoxy]acetic/butyric acids.
Scheme 5Synthesis of 2-[Di/monochloro-4-(1H-imidazol-2-yl)phenoxy]propionic acids.
Figure 3RBC morphological antisickling results of compounds KAUS-4 and KAUS-24. Note that clofibrate and KAUS-23 showed similar prosickling effect as KAUS-24.
The Effect of Compounds 7a–i on Hb Affinity for Oxygen Using Normal Whole Blood a.
| Comp. | Name | R1 | R2 | N | Mean P50 b | ∆P50 c |
|---|---|---|---|---|---|---|
| DMSO d | 38.3 ± 0.0 | 0.0 | ||||
| Clofibrate | 40.3 ± 0.1 | 2.0 ± 0.1 | ||||
| KAUS-1 | Cl | Cl | 1 | 38.3 ± 0.4 | 0.0 ± 0.4 | |
| KAUS-4 | H | Cl | 1 | 37.5 ± 0.3 | −0.8 ± 0.3 | |
| KAUS-7 | Cl | H | 1 | 39.3 ± 0.6 | 1.0 ± 0.6 | |
| KAUS-3 | Cl | Cl | 3 | 38.6 ± 0.1 | 0.3 ± 0.1 | |
| KAUS-6 | H | Cl | 3 | 38.6 ± 0.6 | 0.3 ± 0.6 | |
| KAUS-9 | Cl | H | 3 | 38.2 ± 0.5 | −0.1 ± 0.5 | |
| KAUS-2 | Cl | Cl | 2 | 38.6 ± 0.1 | 0.3 ± 0.1 | |
| KAUS-5 | H | Cl | 2 | 39.2 ± 0.4 | 0.9 ± 0.4 | |
| KAUS-8 | Cl | H | 2 | 38.6 ± 0.4 | 0.3 ± 0.4 |
a Results are the means of two or three measurements. b P50 is the oxygen pressure in mmHg at which normal RBC (22% hematocrit) is 50% saturated with oxygen. c ΔP50 (mm Hg) is P50 of compound treated cells − P50 of control. d The final concentration of DMSO was <2% in all samples.
The Effect of Compounds (13, 17a–e, 21a–c) on Hb Affinity for Oxygen Using Normal Whole Blood a.
| Comp. | Name | R1 | R2 | N | Mean P50 b | ∆P50 c |
|---|---|---|---|---|---|---|
| DMSO d | 38.3 ± 0.0 | 0.0 | ||||
| KAUS-25 | Cl | H | 1 | 39.7 ± 0.3 | 1.4 ± 0.3 | |
| KAUS-19 | Cl | Cl | 1 | 39.2 ± 0.2 | 0.9 ± 0.2 | |
| KAUS-22 | H | Cl | 1 | 41.3 ± 0.05 | 2.9 ± 0.05 | |
| KAUS-26 | Cl | H | 2 | 39.7 ± 0.1 | 1.4 ± 0.1 | |
| KAUS-20 | Cl | Cl | 2 | 38.9 ± 0.3 | 0.7 ± 0.3 | |
| KAUS-23 | H | Cl | 2 | 40.8 ± 0.02 | 2.5 ± 0.02 | |
| KAUS-27 | Cl | H | 3 | 39.1 ± 0.3 | 0.8 ± 0.3 | |
| KAUS-21 | Cl | Cl | 3 | 39.6 ± 0.6 | 1.3 ± 0.6 | |
| KAUS-24 | H | Cl | 3 | 41.7 ± 0.3 | 3.4 ± 0.3 |
a The results are the means of two or three measurements. b P50 is the oxygen pressure at which normal RBC (22% hematocrit) is 50% saturated with oxygen. c ΔP50 is P50 of compound treated cells—P50 of control. d The final concentration of DMSO was <2% in all samples.
Data collection and refinement statistics of deoxygenated Hb in complex with KAUS-23. Numbers in parentheses are for the highest resolution shell.
| Data | KAUS-23 |
|---|---|
| P21 | |
| 62.2, 80.8, 53.4, 90.0, 99.2, 90.0 | |
| 29.64–2.15 (2.23–2.15) | |
| 27383 | |
| 6.75 | |
| 96.2 (94.1) | |
| 21.0 (8.4) | |
| 6.4 (14.6) | |
| 29.64–2.15 (2.23–2.15) | |
| 27358 (2521) | |
| 19.24 (24.73) | |
| 25.71 (35.69) | |
| 0.007 | |
| 1.28 | |
| 95.6 | |
| 3.7 | |
| 29.4 | |
| 29.0 | |
| 27.2 | |
| 40.7 | |
| 54.6 | |
| 34.7 | |
| 5KDQ |
a Rmerge = ΣΣi|Ii(hkl) – |/ΣΣiIi(hkl). b Rfree was calculated from 5% randomly selected reflection for cross-validation. All other measured reflections were used during refinement.
Figure 4Tetrameric structure of deoxygenated Hb (ribbon) in complex with KAUS-23 (K23; sticks). (a) KAUS-23 bound in the central water cavity. Note that only one of the symmetry-related molecules was modelled since the electron density of the second site was too weak and disordered. The α-subunits are colored in yellow and β-subunits in cyan; (b) Close-up view of KAUS-23 binding with the final 2Fo-Fc refined electron density map contoured at 0.8σ. For clarity, not all binding site residues shown but described in the text; (c) Schematic representation of the interactions between KAUS-23 and the protein at the central water cavity.