Literature DB >> 16765986

1.25 A resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.

Sam-Yong Park1, Takeshi Yokoyama, Naoya Shibayama, Yoshitsugu Shiro, Jeremy R H Tame.   

Abstract

The most recent refinement of the crystallographic structure of oxyhaemoglobin (oxyHb) was completed in 1983, and differences between this real-space refined model and later R state models have been interpreted as evidence of crystallisation artefacts, or numerous sub-states. We have refined models of deoxy, oxy and carbonmonoxy Hb to 1.25 A resolution each, and compare them with other Hb structures. It is shown that the older structures reflect the software used in refinement, and many differences with newer structures are unlikely to be physiologically relevant. The improved accuracy of our models clarifies the disagreement between NMR and X-ray studies of oxyHb, the NMR experiments suggesting a hydrogen bond to exist between the distal histidine and oxygen ligand of both the alpha and beta-subunits. The high-resolution crystal structure also reveals a hydrogen bond in both subunit types, but with subtly different geometry which may explain the very different behaviour when this residue is mutated to glycine in alpha or beta globin. We also propose a new set of relatively fixed residues to act as a frame of reference; this set contains a similar number of atoms to the well-known "BGH" frame yet shows a much smaller rmsd value between R and T state models of HbA.

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Year:  2006        PMID: 16765986     DOI: 10.1016/j.jmb.2006.05.036

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  107 in total

1.  Probing the oxyferrous and catalytically active ferryl states of Amphitrite ornata dehaloperoxidase by cryoreduction and EPR/ENDOR spectroscopy. Detection of compound I.

Authors:  Roman Davydov; Robert L Osborne; Muralidharan Shanmugam; Jing Du; John H Dawson; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

2.  Structure of human R-state aquomethemoglobin at 2.0 Å resolution.

Authors:  Jun Yi; Leonard M Thomas; George B Richter-Addo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-24

3.  Blocking the gate to ligand entry in human hemoglobin.

Authors:  Ivan Birukou; Jayashree Soman; John S Olson
Journal:  J Biol Chem       Date:  2010-12-29       Impact factor: 5.157

4.  An investigation of the distal histidyl hydrogen bonds in oxyhemoglobin: effects of temperature, pH, and inositol hexaphosphate.

Authors:  Yue Yuan; Virgil Simplaceanu; Nancy T Ho; Chien Ho
Journal:  Biochemistry       Date:  2010-11-29       Impact factor: 3.162

5.  Hemoglobin dynamics in red blood cells: correlation to body temperature.

Authors:  A M Stadler; I Digel; G M Artmann; J P Embs; G Zaccai; G Büldt
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

Review 6.  Hemoglobin variants: biochemical properties and clinical correlates.

Authors:  Christopher S Thom; Claire F Dickson; David A Gell; Mitchell J Weiss
Journal:  Cold Spring Harb Perspect Med       Date:  2013-03-01       Impact factor: 6.915

7.  Carboetomidate: an analog of etomidate that interacts weakly with 11β-hydroxylase.

Authors:  Sivananthaperumal Shanmugasundararaj; Xiaojuan Zhou; Jens Neunzig; Rita Bernhardt; Joseph F Cotten; Rile Ge; Keith W Miller; Douglas E Raines
Journal:  Anesth Analg       Date:  2013-03-14       Impact factor: 5.108

8.  Modeling of peroxide activation in artemisinin derivatives by serial docking.

Authors:  Roy J Little; Alexis A Pestano; Zaida Parra
Journal:  J Mol Model       Date:  2009-01-14       Impact factor: 1.810

9.  Distal histidine stabilizes bound O2 and acts as a gate for ligand entry in both subunits of adult human hemoglobin.

Authors:  Ivan Birukou; Rachel L Schweers; John S Olson
Journal:  J Biol Chem       Date:  2010-01-15       Impact factor: 5.157

10.  Solution structure of poly(ethylene) glycol-conjugated hemoglobin revealed by small-angle X-ray scattering: implications for a new oxygen therapeutic.

Authors:  Dmitri I Svergun; Fredrik Ekström; Kim D Vandegriff; Ashok Malavalli; Dale A Baker; Calle Nilsson; Robert M Winslow
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

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