| Literature DB >> 27500405 |
Vesna M Coric1,2, Tatjana P Simic1,2, Tatjana D Pekmezovic3,2, Gordana M Basta-Jovanovic4,2, Ana R Savic Radojevic1,2, Sanja M Radojevic-Skodric4,2, Marija G Matic1,2, Dejan P Dragicevic5,2, Tanja M Radic2, Ljiljana M Bogdanovic4,2, Zoran M Dzamic5,2, Marija S Pljesa-Ercegovac1,2.
Abstract
The aim of this study was to evaluate specific glutathione S-transferase (GST) gene variants as determinants of risk in patients with clear cell renal cell carcinoma (cRCC), independently or simultaneously with established RCC risk factors, as well as to discern whether phenotype changes reflect genotype-associated risk. GSTA1, GSTM1, GSTP1 and GSTT1 genotypes were determined in 199 cRCC patients and 274 matched controls. Benzo(a)pyrene diolepoxide (BPDE)-DNA adducts were determined in DNA samples obtained from cRCC patients by ELISA method. Significant association between GST genotype and risk of cRCC development was found for the GSTM1-null and GSTP1-variant genotype (p = 0.02 and p<0.001, respectively). Furthermore, 22% of all recruited cRCC patients were carriers of combined GSTM1-null, GSTT1-active, GSTA1-low activity and GSTP1-variant genotype, exhibiting 9.32-fold elevated cRCC risk compared to the reference genotype combination (p = 0.04). Significant association between GST genotype and cRCC risk in smokers was found only for the GSTP1 genotype, while GSTM1-null/GSTP1-variant/GSTA1 low-activity genotype combination was present in 94% of smokers with cRCC, increasing the risk of cRCC up to 7.57 (p = 0.02). Furthermore, cRCC smokers with GSTM1-null genotype had significantly higher concentration of BPDE-DNA adducts in comparison with GSTM1-active cRCC smokers (p = 0.05). GSTM1, GSTT1, GSTA1 and GSTP1 polymorphisms might be associated with the risk of cRCC, with special emphasis on GSTM1-null and GSTP1-variant genotypes. Combined GSTM1-null, GSTT1-active, GSTA1 low activity and GSTP1-variant genotypes might be considered as "risk-carrying genotype combination" in cRCC.Entities:
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Year: 2016 PMID: 27500405 PMCID: PMC4976979 DOI: 10.1371/journal.pone.0160570
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
PCR: primer sequences, PCR conditions, restriction enzymes and fragment lengths.
| Gene | Primer sequences | PCR protocol | Gel electrophoresis results |
|---|---|---|---|
| F, 5′-GCATCAGCTTGCCCTTCA-3′; R, 5′-AAACGCTGTCACCGTCCTG-3′ | Denature: 94°C for 4mins; Followed by 94°C for 20s; Annealing: 58°C for 20s; Extension: 72°C for 40s; #cycles: 33; Final extension: 72°C for 5 mins; | ||
| F, 5′-GAACTCCCTGAAAAGCTAAAGC-3′; R, 5′-GTTGGGCTCAAATATACGGTGG-3′ | Multiplex PCR: Denature: 94°C for 4mins; Followed by 94°C for 30s; Annealing: 59°C for 30s; Extension: 72°C for 45s; #cycles: 30; Final extension: 72°C for 5mins; | ||
| F, 5′-TTCCTTACTGGTCCTCACATCTC-3′; R, 5′-TCACCGGATCATGGCCAGCA-3′ | |||
| F, 5’-GAACTGCCACTT CAGCTGTCT-3’; R, 5’-CAGCTGCATTTG GAAGTGCTC-3’ | 312bp band; |
Baseline characteristic of patients with cRCC and respective controls.
| Variable | cRCC patients | Controls | OR (95%CI) | p-value |
|---|---|---|---|---|
| 58.09 ± 11.51 | 59.77±10.96 | / | 0.11 | |
| Male | 133 (67) | 184 (67) | 1.00 (reference group) | |
| Female | 66 (33) | 90 (33) | 1.01 (0.68–1.49) | 0.94 |
| No | 75 (48) | 191 (74) | 1.00 (reference group) | |
| Yes | 82 (52) | 67 (26) | 3.07 (1.61–5.84) | 0.001 |
| BMI below 25 | 63 (40) | 92 (38) | 1.00 (reference group) | |
| BMI above 25 | 96 (60) | 153 (62) | 0.80 (0.43–1.46) | 0.47 |
| 26.41±4.49 | 26.36±3.49 | / | 0.89 | |
| Never | 67 (41) | 126 (48) | 1.00 (reference group) | |
| Ever | 97 (59) | 138 (52) | 1.44 (0.90–2.29) | 0.12 |
| 30 (1.35–141.00) | 30 (0.10–88.00) | / | 0.24 | |
| Grade I | 21 (13) | / | / | |
| Grade II | 89 (55) | / | / | |
| Grade III | 48 (29) | / | / | |
| Grade IV | 5 (3) | / | / | |
| pT1 | 78 (42) | / | / | |
| pT2 | 23 (13) | / | / | |
| pT3 | 78 (42) | / | / | |
| pT4 | 5 (3) | / | / |
aMean ±SD;
bOR, odds ratio adjusted to age, gender, pack-years, BMI (body mass index);
cOR, odds ratio adjusted to age, gender, pack-years, hypertension;
d Every day smoking during a minimum of 60-day period prior to the study onset;
eOR, odds ratio adjusted to age, gender, BMI, hypertension; CI, confidence interval;
fMedian (min-max);
g, hAvailable data on patients’ tumor grade and stage, depending on the type of surgery and pathohistology diagnostics;
iBased on the available data.
GST genotypes in relation to the risk of cRCC.
| cRCC patients n, % | Controls n, % | OR (95%CI) | p- value | |
|---|---|---|---|---|
| 87 (44) | 137 (50) | 1.00 (reference group) | ||
| 109 (56) | 137 (50) | 2.07 (1.11–3.84) | 0.02 | |
| 44 (22) | 71 (26) | 1.00 (reference group) | ||
| 152 (78) | 203 (74) | 1.08 (0.52–2.27) | 0.82 | |
| 65 (33) | 112 (41) | 1.00 (reference group) | ||
| 132 (67) | 162 (59) | 1.19 (0.63–2.25) | 0.58 | |
| 44 (23) | 115 (42) | 1.00 (reference group) | ||
| 150 (77) | 159 (58) | 3.14 (1.54–6.43) | <0.001 |
aActive, if at least one active allele present;
bNull if no active alleles present;
cLow activity, if at least one T allele present.
dVariant, if at least one Val allele present;
eOR, odds ratio adjusted to age, gender, pack-years, BMI, hypertension; CI, confidence interval; Deletion GSTM1 and GSTT1 genotypes were investigated in 196 cases and all recruited controls. SNP polymorphism GSTA1 C69T and GSTP1 Ile105Val were analyzed in 197 and 194 cRCC cases, respectively, and all recruited controls.
Combined effect of GST genotypes on risk of cRCC.
| Ca (%)/Co(%) | 29(15)/54(20) | 35(18)/58(21) | - | - | - | - |
| OR (95%CI) | 1.00 | 2.14 (0.67–6.86) | - | - | ||
| - | 0.19 | - | - | - | - | |
| Ca/Co | 58(30)/83(30) | 73(37)/79(29) | - | - | - | |
| OR (95%CI) | 1.03 (0.41–2.61) | 2.00 (0.79–5.07) | - | - | - | - |
| 0.94 | 0.14 | - | - | - | - | |
| Ca (%)/Co(%) | 17(9)/55(20) | 27(14)/60(22) | 17(9)/54(20) | 26(13)/61(22) | - | |
| OR (95%CI) | 1.00 | 5.63 (1.11–28.53) | 1.00 | 3.40 (0.72–16.00) | - | - |
| - | 0.03 | - | 0.12 | - | - | |
| Ca (%)/Co(%) | 67(35)/82(30) | 81(42)/77(28) | 46(24)/58(21) | 103 (54)/101(36) | - | - |
| OR (95%CI) | 4.40 (1.17–16.46) | 11.23 (2.62–48.08) | 5.39 (1.42–20.39) | 4.93 (1.48–16.43) | - | - |
| 0.02 | <0.001 | 0.01 | 0.009 | - | - | |
| Ca (%)/Co(%) | 67(34)/102(37) | 85(44)/101(36) | 53(27)/82(30) | 99 (51)/121(44) | 37(19)/85(31) | 113(59)/118(43) |
| OR (95%CI) | 1.57 (0.49–5.01) | 2.78 (0.80–9.64) | 3.32 (0.72–15.22) | 2.62(0.65–10.58) | 2.47 (0.37–10.37) | 4.10 (0.95–17.35) |
| 0.43 | 0.10 | 0.12 | 0.17 | 0.34 | 0.05 | |
| Ca (%)/Co(%) | 20(10)/35(13) | 24(12)/36(14) | 11(6)/30(11) | 32 (16)/41(15) | 7(4)/30(11) | 35(18)/41(15) |
| OR (95%CI) | 1.00 | 3.36 (0.77–14.66) | 1.00 | 3.57 (0.72–17.72) | 1.00 | 4.47 (0.72–27.43) |
| - | 0.10 | - | 0.11 | - | 0.10 | |
aActive, if at least one active allele present.
bNull, if no active alleles present.
cLow activity, if at least one T allele present.
dVariant, if at least one Val allele present;
eOR, odds ratio adjusted to age, gender, pack-years, BMI, hypertension; CI, confidence interval; Ca, number of cRCC patients; Co, controls;
fReference group.
GST genotypes in relation to the risk of cRCC.
| cRCC patients n, % | Controls n, % | OR (95%CI) | p—value | |
|---|---|---|---|---|
| 1 (1) | 7 (3) | 1.00 (reference group) | ||
| 43 (22) | 34 (12) | 9.32 (1.08–80.18) | 0.04 |
aActive, if at least one active allele present;
bNull if no active alleles present;
cLow activity, if at least one T allele present.
dVariant, if at least one Val allele present;
eOR, odds ratio adjusted to age and gender; CI, confidence interval. Genotype combinations were investigated in 194 cases and all recruited controls; GSTM1-active/GSTT1-null/GSTA1 active/GSTP1-wild type- “Reference genotype combination”; GSTM1-null/GSTT1-active/GSTA1low-activity/GSTP1-variant- “Risk carrying genotype combination”.
The association between GST genotypes and the levels of BPDE-DNA adducts in cRCC smokers.
| cRCC smokers n,% | Controls- smokers n,% | OR (95%CI) | p-value | BPDE-DNA adducts in cRCC smokers (ng/ml) | p-value | |
|---|---|---|---|---|---|---|
| 37 (39) | 80 (58) | 1.00 | 2.13 (1.39–5.22) | |||
| 57 (61) | 58 (42) | 1.71 (0.95–3.06) | 0.07 | 2.74 (1.64–17.93) | ||
| 23 (24) | 30 (22) | 1.00 | 2.81 (1.51–8.55) | |||
| 71 (76) | 108 (78) | 1.07 (0.53–2.15) | 0.84 | 2.37 (1.39–17.93) | 0.32 | |
| 23 (25) | 46 (33) | 1.00 | 2.50 (1.39–8.55) | |||
| 67 (75) | 92 (67) | 1.21 (0.65–2.25) | 0.53 | 2.50 (1.39–17.93) | 0.61 | |
| 16 (17) | 53 (38) | 1.00 | 2.50 (1.76–6.95) | |||
| 77 (83) | 85 (62) | 2.87 (1.45–5.69) | 0.002 | 2.44 (1.39–17.39) | 0.65 | |
| 5 (10) | 27 (46) | 1.00 | 2.00 (1.76–2.75) | |||
| 45 (90) | 32 (54) | 5.44 (1.74–16.98) | 0.004 | 2.50 (1.64–17.93) | 0.34 | |
| 2 (6) | 10 (30) | 1.00 | 2.37 (2.01–2.75) | |||
| 32 (94) | 23 (70) | 7.57 (1.26–45.30) | 0.02 | 2.44 (1.64–17.93) | 0.81 |
aActive, if at least one active allele present;
bNull, if no active alleles present;
cLow activity, if at least one T allele present;
dVariant, if at least one Val allele present;
eOR odds ratio adjusted to age, gender, BMI, hypertension; CI, confidence interval;
fReference group;
gMedian (min-max);
Deletion GSTM1 and GSTT1 genotypes were investigated in 94 out of 97 cRCC-smokers and all recruited controls-smokers (138). SNP polymorphism GSTA1 C69T and GSTP1 Ile105Val were analyzed in 90 out of 97 and 93 out of 97 cRCC-smokers, respectively, and all recruited controls-smokers (138).