Literature DB >> 27493211

Structure and function of [NiFe] hydrogenases.

Hideaki Ogata1, Wolfgang Lubitz2, Yoshiki Higuchi3,4,5.   

Abstract

Hydrogenases catalyze the reversible conversion of molecular hydrogen to protons and electrons via a heterolytic splitting mechanism. The active sites of [NiFe] hydrogenases comprise a dinuclear Ni-Fe center carrying CO and CN- ligands. The catalytic activity of the standard (O2-sensitive) [NiFe] hydrogenases vanishes under aerobic conditions. The O2-tolerant [NiFe] hydrogenases can sustain H2 oxidation activity under atmospheric conditions. These hydrogenases have very similar active site structures that change the ligand sphere during the activation/catalytic process. An important structural difference between these hydrogenases has been found for the proximal iron-sulphur cluster located in the vicinity of the active site. This unprecedented [4Fe-3S]-6Cys cluster can supply two electrons, which lead to rapid recovery of the O2 inactivation, to the [NiFe] active site.
© The Authors 2016. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Entities:  

Keywords:  X-ray crystallography; [4Fe-3S] cluster; [NiFe] active site; hydrogenase; oxygen tolerance

Mesh:

Substances:

Year:  2016        PMID: 27493211     DOI: 10.1093/jb/mvw048

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  16 in total

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Authors:  Dhanashree Selvan; Pallavi Prasad; Erik R Farquhar; Yelu Shi; Skyler Crane; Yong Zhang; Saumen Chakraborty
Journal:  ACS Catal       Date:  2019-05-16       Impact factor: 13.084

Review 2.  Biosynthetic Approaches towards the Design of Artificial Hydrogen-Evolution Catalysts.

Authors:  Pallavi Prasad; Dhanashree Selvan; Saumen Chakraborty
Journal:  Chemistry       Date:  2020-08-26       Impact factor: 5.236

Review 3.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 4.  Selenium versus sulfur: Reversibility of chemical reactions and resistance to permanent oxidation in proteins and nucleic acids.

Authors:  Michael J Maroney; Robert J Hondal
Journal:  Free Radic Biol Med       Date:  2018-03-26       Impact factor: 7.376

5.  The oxygen reactivity of an artificial hydrogenase designed in a reengineered copper storage protein.

Authors:  Dhanashree Selvan; Yelu Shi; Pallavi Prasad; Skyler Crane; Yong Zhang; Saumen Chakraborty
Journal:  Dalton Trans       Date:  2020-01-23       Impact factor: 4.390

6.  Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77.

Authors:  Takahiro Imanishi; Koji Nishikawa; Midori Taketa; Katsuhiro Higuchi; Hulin Tai; Shun Hirota; Hironobu Hojo; Toru Kawakami; Kiriko Hataguchi; Kayoko Matsumoto; Hideaki Ogata; Yoshiki Higuchi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-01-27       Impact factor: 1.056

7.  H2 activation by hydrogenase-inspired NiFe catalyst using frustrated Lewis pair: effect of buffer and halide ion in the heterolytic H-H bond cleavage.

Authors:  Miho Isegawa; Takahiro Matsumoto; Seiji Ogo
Journal:  RSC Adv       Date:  2021-08-23       Impact factor: 3.361

Review 8.  Proton Transfer in the Catalytic Cycle of [NiFe] Hydrogenases: Insight from Vibrational Spectroscopy.

Authors:  Philip A Ash; Ricardo Hidalgo; Kylie A Vincent
Journal:  ACS Catal       Date:  2017-02-23       Impact factor: 13.084

9.  Studying O2 pathways in [NiFe]- and [NiFeSe]-hydrogenases.

Authors:  Tiago M Barbosa; Carla S A Baltazar; Davide R Cruz; Diana Lousa; Cláudio M Soares
Journal:  Sci Rep       Date:  2020-06-29       Impact factor: 4.379

10.  QM/MM Investigation of the Role of a Second Coordination Shell Arginine in [NiFe]-Hydrogenases.

Authors:  Andrés M Escorcia; Matthias Stein
Journal:  Front Chem       Date:  2018-05-15       Impact factor: 5.221

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