Literature DB >> 27477486

DNA-encoded chemical libraries: foundations and applications in lead discovery.

Gunther Zimmermann1, Dario Neri2.   

Abstract

DNA-encoded chemical libraries have emerged as a powerful tool for hit identification in the pharmaceutical industry and in academia. Similar to biological display techniques (such as phage display technology), DNA-encoded chemical libraries contain a link between the displayed chemical building block and an amplifiable genetic barcode on DNA. Using routine procedures, libraries containing millions to billions of compounds can be easily produced within a few weeks. The resulting compound libraries are screened in a single test tube against proteins of pharmaceutical interest and hits can be identified by PCR amplification of DNA barcodes and subsequent high-throughput sequencing.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27477486      PMCID: PMC5214759          DOI: 10.1016/j.drudis.2016.07.013

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  40 in total

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Authors:  C A Lipinski; F Lombardo; B W Dominy; P J Feeney
Journal:  Adv Drug Deliv Rev       Date:  2001-03-01       Impact factor: 15.470

2.  DNA-templated organic synthesis and selection of a library of macrocycles.

Authors:  Zev J Gartner; Brian N Tse; Rozalina Grubina; Jeffrey B Doyon; Thomas M Snyder; David R Liu
Journal:  Science       Date:  2004-08-19       Impact factor: 47.728

3.  Encoded self-assembling chemical libraries.

Authors:  Samu Melkko; Jörg Scheuermann; Christoph E Dumelin; Dario Neri
Journal:  Nat Biotechnol       Date:  2004-04-18       Impact factor: 54.908

4.  Encoded combinatorial chemistry.

Authors:  S Brenner; R A Lerner
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

5.  On the magnitude of the chelate effect for the recognition of proteins by pharmacophores scaffolded by self-assembling oligonucleotides.

Authors:  Samu Melkko; Christoph E Dumelin; Jörg Scheuermann; Dario Neri
Journal:  Chem Biol       Date:  2006-02

6.  Isolation of high-affinity trypsin inhibitors from a DNA-encoded chemical library.

Authors:  Samu Melkko; Yixin Zhang; Christoph E Dumelin; Jörg Scheuermann; Dario Neri
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

7.  Translation of DNA into a library of 13,000 synthetic small-molecule macrocycles suitable for in vitro selection.

Authors:  Brian N Tse; Thomas M Snyder; Yinghua Shen; David R Liu
Journal:  J Am Chem Soc       Date:  2008-10-29       Impact factor: 15.419

8.  A yoctoliter-scale DNA reactor for small-molecule evolution.

Authors:  Margit Haahr Hansen; Peter Blakskjaer; Lars Kolster Petersen; Tara Heitner Hansen; Jonas Westergaard Højfeldt; Kurt Vesterager Gothelf; Nils Jakob Vest Hansen
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

9.  DNA-encoded chemical libraries for the discovery of MMP-3 inhibitors.

Authors:  Jörg Scheuermann; Christoph E Dumelin; Samu Melkko; Yixin Zhang; Luca Mannocci; Madalina Jaggi; Jens Sobek; Dario Neri
Journal:  Bioconjug Chem       Date:  2008-02-07       Impact factor: 4.774

10.  DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution.

Authors:  David R Halpin; Pehr B Harbury
Journal:  PLoS Biol       Date:  2004-06-22       Impact factor: 8.029

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  23 in total

1.  A Solution Phase Platform to Characterize Chemical Reaction Compatibility with DNA-Encoded Chemical Library Synthesis.

Authors:  Anokha S Ratnayake; Mark E Flanagan; Timothy L Foley; Justin D Smith; Jillian G Johnson; Justin Bellenger; Justin I Montgomery; Brian M Paegel
Journal:  ACS Comb Sci       Date:  2019-09-06       Impact factor: 3.784

2.  Catalyst discovery through megalibraries of nanomaterials.

Authors:  Edward J Kluender; James L Hedrick; Keith A Brown; Rahul Rao; Brian Meckes; Jingshan S Du; Liane M Moreau; Benji Maruyama; Chad A Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-17       Impact factor: 11.205

Review 3.  Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.

Authors:  Glen Liszczak; Tom W Muir
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-06       Impact factor: 15.336

4.  Comparative evaluation of DNA-encoded chemical selections performed using DNA in single-stranded or double-stranded format.

Authors:  Gabriele Bassi; Nicholas Favalli; Sebastian Oehler; Adriano Martinelli; Marco Catalano; Jörg Scheuermann; Dario Neri
Journal:  Biochem Biophys Res Commun       Date:  2020-05-05       Impact factor: 3.575

5.  RASS-Enabled S/P-C and S-N Bond Formation for DEL Synthesis.

Authors:  Dillon T Flood; Xuejing Zhang; Xiang Fu; Zhenxiang Zhao; Shota Asai; Brittany B Sanchez; Emily J Sturgell; Julien C Vantourout; Paul Richardson; Mark E Flanagan; David W Piotrowski; Dominik K Kölmel; Jinqiao Wan; Mei-Hsuan Tsai; Jason S Chen; Phil S Baran; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-11       Impact factor: 15.336

Review 6.  Targeting intracellular protein-protein interactions with cell-permeable cyclic peptides.

Authors:  Ziqing Qian; Patrick G Dougherty; Dehua Pei
Journal:  Curr Opin Chem Biol       Date:  2017-04-04       Impact factor: 8.822

Review 7.  Unifying principles of bifunctional, proximity-inducing small molecules.

Authors:  Christopher J Gerry; Stuart L Schreiber
Journal:  Nat Chem Biol       Date:  2020-03-20       Impact factor: 15.040

8.  Efficient copper-catalyzed amination of DNA-conjugated aryl iodides under mild aqueous conditions.

Authors:  Yves Ruff; Frédéric Berst
Journal:  Medchemcomm       Date:  2018-05-17       Impact factor: 3.597

Review 9.  DNA-encoded chemical libraries - achievements and remaining challenges.

Authors:  Nicholas Favalli; Gabriele Bassi; Jörg Scheuermann; Dario Neri
Journal:  FEBS Lett       Date:  2018-05-10       Impact factor: 4.124

Review 10.  DNA-Encoded Chemical Libraries: A Selection System Based on Endowing Organic Compounds with Amplifiable Information.

Authors:  Dario Neri; Richard A Lerner
Journal:  Annu Rev Biochem       Date:  2018-01-12       Impact factor: 23.643

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