Literature DB >> 27474041

Correlation-based feature selection and classification via regression of segmented chromosomes using geometric features.

Tanvi Arora1, Renu Dhir2.   

Abstract

The genetic defects in the humans are uncovered by studying the chromosomes, as they are the genetic information carriers. They are non-rigid objects and they appear in different orientations when they are imaged. To find out the genetic defects, the chromosomes are pre-processed so that they are not touching, overlapping, and bent, and the noise is also discarded. The presence of bends, overlaps, or touches makes it difficult to uncover the genetic abnormalities. So there is a need for development of an efficient technique to classify the segmented chromosomes into different types and then pre-process them in order to correct their orientation. In this work, a hybrid classification technique based upon correlation-based feature selection and classification via regression approach, which will classify the segmented chromosomes into five categories viz; straight, overlapping, bent, touching, or noise is presented. The performance evaluation has been done using 1592 segmented chromosomes from Advance Digital Imaging Research data set. The over-all accuracy of 94.78 % has been obtained for the five class problem. The performance of the proposed classifier has been compared with Bayes Net, Naïve Bayes, Radial Bias Feed Forward Network, and k-nearest-neighbour classifiers. Based upon this categorization, different pre-processing techniques will be applied to correct the orientation of the chromosomes.

Entities:  

Keywords:  Chromosomes; Classification; Feature extraction; Feature selection; Genetic defects

Mesh:

Year:  2016        PMID: 27474041     DOI: 10.1007/s11517-016-1553-2

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  8 in total

Review 1.  A review of metaphase chromosome image selection techniques for automatic karyotype generation.

Authors:  Tanvi Arora; Renu Dhir
Journal:  Med Biol Eng Comput       Date:  2015-12-16       Impact factor: 2.602

2.  Data classification with radial basis function networks based on a novel kernel density estimation algorithm.

Authors:  Yen-Jen Oyang; Shien-Ching Hwang; Yu-Yen Ou; Chien-Yu Chen; Zhi-Wei Chen
Journal:  IEEE Trans Neural Netw       Date:  2005-01

3.  The Chromosome Number of Maize.

Authors:  T A Kiesselbach; N F Petersen
Journal:  Genetics       Date:  1925-01       Impact factor: 4.562

4.  Maximum-likelihood decomposition of overlapping and touching M-FISH chromosomes using geometry, size and color information.

Authors:  Hyohoon Choi; Alan C Bovik; Kenneth R Castleman
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

5.  CFS-SMO based classification of breast density using multiple texture models.

Authors:  Vipul Sharma; Sukhwinder Singh
Journal:  Med Biol Eng Comput       Date:  2014-04-26       Impact factor: 2.602

6.  On fully automatic feature measurement for banded chromosome classification.

Authors:  J Piper; E Granum
Journal:  Cytometry       Date:  1989-05

7.  Automated selection of metaphase cells by quality.

Authors:  H T van den Berg; H F de France; J D Habbema; J W Raatgever
Journal:  Cytometry       Date:  1981-05

8.  MetaSel: a metaphase selection tool using a Gaussian-based classification technique.

Authors:  Ravi Uttamatanin; Peerapol Yuvapoositanon; Apichart Intarapanich; Saowaluck Kaewkamnerd; Ratsapan Phuksaritanon; Anunchai Assawamakin; Sissades Tongsima
Journal:  BMC Bioinformatics       Date:  2013-10-22       Impact factor: 3.169

  8 in total

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