Literature DB >> 27303111

Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Cerebellar Atrophy Pattern Visualization.

Zhen Yang1, S Mazdak Abulnaga2, Aaron Carass1, Kalyani Kansal3, Bruno M Jedynak4, Chiadi Onyike3, Sarah H Ying3, Jerry L Prince5.   

Abstract

Cerebellar dysfunction can lead to a wide range of movement disorders. Studying the cerebellar atrophy pattern associated with different cerebellar disease types can potentially help in diagnosis, prognosis, and treatment planning. In this paper, we present a landmark based shape analysis pipeline to classify healthy control and different ataxia types and to visualize the characteristic cerebellar atrophy patterns associated with different types. A highly informative feature representation of the cerebellar structure is constructed by extracting dense homologous landmarks on the boundary surfaces of cerebellar sub-structures. A diagnosis group classifier based on this representation is built using partial least square dimension reduction and regularized linear discriminant analysis. The characteristic atrophy pattern for an ataxia type is visualized by sampling along the discriminant direction between healthy controls and the ataxia type. Experimental results show that the proposed method can successfully classify healthy controls and different ataxia types. The visualized cerebellar atrophy patterns were consistent with the regional volume decreases observed in previous studies, but the proposed method provides intuitive and detailed understanding about changes of overall size and shape of the cerebellum, as well as that of individual lobules.

Entities:  

Keywords:  Cerebellar ataxia; atrophy pattern; landmarks; linear discriminant analysis; magnetic resonance images; partial least squares; shape analysis; visualization

Year:  2016        PMID: 27303111      PMCID: PMC4903164          DOI: 10.1117/12.2217313

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  23 in total

Review 1.  Voxel-based morphometry--the methods.

Authors:  J Ashburner; K J Friston
Journal:  Neuroimage       Date:  2000-06       Impact factor: 6.556

2.  Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain.

Authors:  Xiaodong Tao; Jerry L Prince; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

3.  Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling.

Authors:  Alejandro F Frangi; Daniel Rueckert; Julia A Schnabel; Wiro J Niessen
Journal:  IEEE Trans Med Imaging       Date:  2002-09       Impact factor: 10.048

4.  Adapting Active Shape Models for 3D segmentation of tubular structures in medical images.

Authors:  Marleen de Bruijne; Bram van Ginneken; Max A Viergever; Wiro J Niessen
Journal:  Inf Process Med Imaging       Date:  2003-07

5.  Regularized linear discriminant analysis and its application in microarrays.

Authors:  Yaqian Guo; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2006-04-07       Impact factor: 5.899

6.  COMPARE: classification of morphological patterns using adaptive regional elements.

Authors:  Yong Fan; Dinggang Shen; Ruben C Gur; Raquel E Gur; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2007-01       Impact factor: 10.048

Review 7.  The cerebellum, cerebellar disorders, and cerebellar research--two centuries of discoveries.

Authors:  Mario Manto
Journal:  Cerebellum       Date:  2008       Impact factor: 3.847

8.  Statistical shape analysis of neuroanatomical structures based on medial models.

Authors:  M Styner; G Gerig; J Lieberman; D Jones; D Weinberger
Journal:  Med Image Anal       Date:  2003-09       Impact factor: 8.545

9.  Dissociation of grey and white matter reduction in spinocerebellar ataxia type 3 and 6: a voxel-based morphometry study.

Authors:  Carsten Lukas; Ludger Schöls; Barbara Bellenberg; Udo Rüb; Horst Przuntek; Gebhard Schmid; Odo Köster; Boris Suchan
Journal:  Neurosci Lett       Date:  2006-09-26       Impact factor: 3.046

10.  Ataxia-telangiectasia: the pattern of cerebellar atrophy on MRI.

Authors:  F Tavani; R A Zimmerman; G T Berry; K Sullivan; R Gatti; P Bingham
Journal:  Neuroradiology       Date:  2003-04-11       Impact factor: 2.804

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  1 in total

1.  A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.

Authors:  S Mazdak Abulnaga; Zhen Yang; Aaron Carass; Kalyani Kansal; Bruno M Jedynak; Chiadi U Onyike; Sarah H Ying; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-24
  1 in total

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