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Literature DB >> 27458367

Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM.

Ruth Pauli¹, Alexander Bowring¹, Richard Reynolds², Gang Chen², Thomas E Nichols³, Camille Maumet¹.

Abstract

Entities: Chemical Disease Gene Species

Keywords: data sharing; fMRI analysis; functional MRI; neuroimaging; provenance

Year: 2016 PMID： 27458367 PMCID： PMC4932120 DOI： 10.3389/fninf.2016.00024

Source DB: PubMed Journal: Front Neuroinform ISSN： 1662-5196 Impact factor: 4.081

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11 in total

1. Modulation of competing memory systems by distraction.

Authors: Karin Foerde; Barbara J Knowlton; Russell A Poldrack
Journal: Proc Natl Acad Sci U S A Date: 2006-07-25 Impact factor: 11.205

2. Enhancement of MR images using registration for signal averaging.

Authors: C J Holmes; R Hoge; L Collins; R Woods; A W Toga; A C Evans
Journal: J Comput Assist Tomogr Date: 1998 Mar-Apr Impact factor: 1.826

Review 3. Making big data open: data sharing in neuroimaging.

Authors: Russell A Poldrack; Krzysztof J Gorgolewski
Journal: Nat Neurosci Date: 2014-10-28 Impact factor: 24.884

4. A high-resolution 7-Tesla fMRI dataset from complex natural stimulation with an audio movie.

Authors: Michael Hanke; Florian J Baumgartner; Pierre Ibe; Falko R Kaule; Stefan Pollmann; Oliver Speck; Wolf Zinke; Jörg Stadler
Journal: Sci Data Date: 2014-05-27 Impact factor: 6.444

Review 5. The WU-Minn Human Connectome Project: an overview.

Authors: David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal: Neuroimage Date: 2013-05-16 Impact factor: 6.556

6. Towards structured sharing of raw and derived neuroimaging data across existing resources.

Authors: D B Keator; K Helmer; J Steffener; J A Turner; T G M Van Erp; S Gadde; N Ashish; G A Burns; B N Nichols
Journal: Neuroimage Date: 2013-05-30 Impact factor: 6.556

Review 7. FSL.

Authors: Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal: Neuroimage Date: 2011-09-16 Impact factor: 6.556

8. Data sharing in neuroimaging research.

Authors: Jean-Baptiste Poline; Janis L Breeze; Satrajit Ghosh; Krzysztof Gorgolewski; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Karl G Helmer; David B Keator; Daniel S Marcus; Russell A Poldrack; Yannick Schwartz; John Ashburner; David N Kennedy
Journal: Front Neuroinform Date: 2012-04-05 Impact factor: 4.081

9. On the plurality of (methodological) worlds: estimating the analytic flexibility of FMRI experiments.

Authors: Joshua Carp
Journal: Front Neurosci Date: 2012-10-11 Impact factor: 4.677

10. Toward open sharing of task-based fMRI data: the OpenfMRI project.

Authors: Russell A Poldrack; Deanna M Barch; Jason P Mitchell; Tor D Wager; Anthony D Wagner; Joseph T Devlin; Chad Cumba; Oluwasanmi Koyejo; Michael P Milham
Journal: Front Neuroinform Date: 2013-07-08 Impact factor: 4.081

11 in total

1. A tail of two sides: Artificially doubled false positive rates in neuroimaging due to the sidedness choice with t-tests.

Authors: Gang Chen; Robert W Cox; Daniel R Glen; Justin K Rajendra; Richard C Reynolds; Paul A Taylor
Journal: Hum Brain Mapp Date: 2018-09-28 Impact factor: 5.038

2. Long-chain polyunsaturated fatty acid supplementation in the first year of life affects brain function, structure, and metabolism at age nine years.

Authors: Rebecca J Lepping; Robyn A Honea; Laura E Martin; Ke Liao; In-Young Choi; Phil Lee; Vlad B Papa; William M Brooks; D Jill Shaddy; Susan E Carlson; John Colombo; Kathleen M Gustafson
Journal: Dev Psychobiol Date: 2018-10-11 Impact factor: 3.038

Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM.

1. Modulation of competing memory systems by distraction.

2. Enhancement of MR images using registration for signal averaging.

Review 3. Making big data open: data sharing in neuroimaging.

4. A high-resolution 7-Tesla fMRI dataset from complex natural stimulation with an audio movie.

Review 5. The WU-Minn Human Connectome Project: an overview.

6. Towards structured sharing of raw and derived neuroimaging data across existing resources.

Review 7. FSL.

8. Data sharing in neuroimaging research.

9. On the plurality of (methodological) worlds: estimating the analytic flexibility of FMRI experiments.

10. Toward open sharing of task-based fMRI data: the OpenfMRI project.

1. A tail of two sides: Artificially doubled false positive rates in neuroimaging due to the sidedness choice with t-tests.

2. Long-chain polyunsaturated fatty acid supplementation in the first year of life affects brain function, structure, and metabolism at age nine years.

3. 'Visual' cortices of congenitally blind adults are sensitive to response selection demands in a go/no-go task.

Review 4. A Hitchhiker's Guide to Functional Magnetic Resonance Imaging.

5. Neuroimaging of pain in animal models: a review of recent literature.

Review 6. 3D Deep Learning on Medical Images: A Review.

7. Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain.

8. Exploring the impact of analysis software on task fMRI results.

9. LISA improves statistical analysis for fMRI.

10. Reproducibility in the absence of selective reporting: An illustration from large-scale brain asymmetry research.