Literature DB >> 27454154

Glyco-seek: Ultrasensitive Detection of Protein-Specific Glycosylation by Proximity Ligation Polymerase Chain Reaction.

Peter V Robinson1,2, Cheng-Ting Tsai1,2, Amber E de Groot1,2, Julia L McKechnie1,2, Carolyn R Bertozzi1,2.   

Abstract

We report a non-destructive biochemical technique, termed "Glyco-seek", for analysis of O-GlcNAcylated proteins. Glyco-seek combines chemoenzymatic labeling, proximity ligation, and quantitative polymerase chain reaction to detect O-GlcNAcylated proteins with ultrahigh sensitivity. Our glycan-specific assay can be paired with traditional proximity ligation assays to simultaneously determine the change in total protein levels. We show that Glyco-seek detects attomoles of glycoproteins of interest from cell lysates, with sensitivity several orders of magnitude higher than that of current techniques. We used the method to directly assay the O-GlcNAcylation status of a low-abundance transcription factor from cell lysates without need for isolation or enrichment.

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Year:  2016        PMID: 27454154      PMCID: PMC5327792          DOI: 10.1021/jacs.6b03861

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Identification of GlcNAcylation sites of peptides and alpha-crystallin using Q-TOF mass spectrometry.

Authors:  R J Chalkley; A L Burlingame
Journal:  J Am Soc Mass Spectrom       Date:  2001-10       Impact factor: 3.109

2.  Cytokine detection by antibody-based proximity ligation.

Authors:  Mats Gullberg; Sigrún M Gústafsdóttir; Edith Schallmeiner; Jonas Jarvius; Mattias Bjarnegård; Christer Betsholtz; Ulf Landegren; Simon Fredriksson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-21       Impact factor: 11.205

3.  O-GlcNAc regulates pluripotency and reprogramming by directly acting on core components of the pluripotency network.

Authors:  Hyonchol Jang; Tae Wan Kim; Sungho Yoon; Soo-Youn Choi; Tae-Wook Kang; Seon-Young Kim; Yoo-Wook Kwon; Eun-Jung Cho; Hong-Duk Youn
Journal:  Cell Stem Cell       Date:  2012-05-17       Impact factor: 24.633

4.  Multiplexed protein detection by proximity ligation for cancer biomarker validation.

Authors:  Simon Fredriksson; William Dixon; Hanlee Ji; Albert C Koong; Michael Mindrinos; Ronald W Davis
Journal:  Nat Methods       Date:  2007-03-18       Impact factor: 28.547

Review 5.  Modulation of transcription factor function by O-GlcNAc modification.

Authors:  Sabire Ozcan; Sreenath S Andrali; Jamie E L Cantrell
Journal:  Biochim Biophys Acta       Date:  2010-03-02

Review 6.  Carbohydrate molecular weight profiling, sequence, linkage, and branching data: ES-MS and CID.

Authors:  V N Reinhold; B B Reinhold; C E Costello
Journal:  Anal Chem       Date:  1995-06-01       Impact factor: 6.986

7.  A bispecific antibody composed of a nonneutralizing antibody to the gp41 immunodominant region and an anti-CD89 antibody directs broad human immunodeficiency virus destruction by neutrophils.

Authors:  Mark Duval; Marshall R Posner; Lisa A Cavacini
Journal:  J Virol       Date:  2008-02-13       Impact factor: 5.103

8.  Identification of new cancer biomarkers based on aberrant mucin glycoforms by in situ proximity ligation.

Authors:  Rita Pinto; Ana S Carvalho; Tim Conze; Ana Magalhães; Gianfranco Picco; Joy M Burchell; Joyce Taylor-Papadimitriou; Celso A Reis; Raquel Almeida; Ulla Mandel; Henrik Clausen; Ola Söderberg; Leonor David
Journal:  J Cell Mol Med       Date:  2012-07       Impact factor: 5.310

9.  Diabetic hyperglycaemia activates CaMKII and arrhythmias by O-linked glycosylation.

Authors:  Jeffrey R Erickson; Laetitia Pereira; Lianguo Wang; Guanghui Han; Amanda Ferguson; Khanha Dao; Ronald J Copeland; Florin Despa; Gerald W Hart; Crystal M Ripplinger; Donald M Bers
Journal:  Nature       Date:  2013-09-29       Impact factor: 49.962

10.  Live-Cell Labeling of Specific Protein Glycoforms by Proximity-Enhanced Bioorthogonal Ligation.

Authors:  Peter V Robinson; Gabriela de Almeida-Escobedo; Amber E de Groot; Julia L McKechnie; Carolyn R Bertozzi
Journal:  J Am Chem Soc       Date:  2015-08-17       Impact factor: 15.419

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  10 in total

1.  A Concise, Modular Antibody-Oligonucleotide Conjugation Strategy Based on Disuccinimidyl Ester Activation Chemistry.

Authors:  Gang Li; Raymond E Moellering
Journal:  Chembiochem       Date:  2019-05-03       Impact factor: 3.164

2.  Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation.

Authors:  Gang Li; Mark A Eckert; Jae Won Chang; Jeffrey E Montgomery; Agnieszka Chryplewicz; Ernst Lengyel; Raymond E Moellering
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

Review 3.  Deciphering the Functions of Protein O-GlcNAcylation with Chemistry.

Authors:  Matthew Worth; Hao Li; Jiaoyang Jiang
Journal:  ACS Chem Biol       Date:  2017-01-19       Impact factor: 5.100

Review 4.  Tools for Studying Glycans: Recent Advances in Chemoenzymatic Glycan Labeling.

Authors:  Aime Lopez Aguilar; Jennie Grace Briard; Linette Yang; Ben Ovryn; Matthew Scott Macauley; Peng Wu
Journal:  ACS Chem Biol       Date:  2017-02-13       Impact factor: 5.100

Review 5.  Tools for mammalian glycoscience research.

Authors:  Matthew E Griffin; Linda C Hsieh-Wilson
Journal:  Cell       Date:  2022-07-08       Impact factor: 66.850

6.  Co-opting a Bioorthogonal Reaction for Oncometabolite Detection.

Authors:  Thomas T Zengeya; Julie M Garlick; Rhushikesh A Kulkarni; Mikayla Miley; Allison M Roberts; Youfeng Yang; Daniel R Crooks; Carole Sourbier; W Marston Linehan; Jordan L Meier
Journal:  J Am Chem Soc       Date:  2016-11-30       Impact factor: 15.419

7.  An activity-dependent proximity ligation platform for spatially resolved quantification of active enzymes in single cells.

Authors:  Gang Li; Jeffrey E Montgomery; Mark A Eckert; Jae Won Chang; Samantha M Tienda; Ernst Lengyel; Raymond E Moellering
Journal:  Nat Commun       Date:  2017-11-24       Impact factor: 14.919

8.  Site-specific DNA functionalization through the tetrazene-forming reaction in ionic liquids.

Authors:  Seiya Ishizawa; Munkhtuya Tumurkhuu; Elizabeth J Gross; Jun Ohata
Journal:  Chem Sci       Date:  2022-01-20       Impact factor: 9.825

Review 9.  Chemical Reporters and Their Bioorthogonal Reactions for Labeling Protein O-GlcNAcylation.

Authors:  Eun Ju Kim
Journal:  Molecules       Date:  2018-09-20       Impact factor: 4.411

Review 10.  Asking more from metabolic oligosaccharide engineering.

Authors:  Pierre-André Gilormini; Anna R Batt; Matthew R Pratt; Christophe Biot
Journal:  Chem Sci       Date:  2018-09-18       Impact factor: 9.825

  10 in total

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