Literature DB >> 27960310

Co-opting a Bioorthogonal Reaction for Oncometabolite Detection.

Thomas T Zengeya1, Julie M Garlick1, Rhushikesh A Kulkarni1, Mikayla Miley1, Allison M Roberts1, Youfeng Yang2, Daniel R Crooks2, Carole Sourbier2, W Marston Linehan2, Jordan L Meier1.   

Abstract

Dysregulated metabolism is a hallmark of many diseases, including cancer. Methods to fluorescently detect metabolites have the potential to enable new approaches to cancer detection and imaging. However, fluorescent sensing methods for naturally occurring cellular metabolites are relatively unexplored. Here we report the development of a chemical approach to detect the oncometabolite fumarate. Our strategy exploits a known bioorthogonal reaction, the 1,3-dipolar cycloaddition of nitrileimines and electron-poor olefins, to detect fumarate via fluorescent pyrazoline cycloadduct formation. We demonstrate hydrazonyl chlorides serve as readily accessible nitrileimine precursors, whose reactivity and spectral properties can be tuned to enable detection of fumarate and other dipolarophile metabolites. Finally, we show this reaction can be used to detect enzyme activity changes caused by mutations in fumarate hydratase, which underlie the familial cancer predisposition syndrome hereditary leiomyomatosis and renal cell cancer. Our studies define a novel intersection of bioorthogonal chemistry and metabolite reactivity that may be harnessed to enable biological profiling, imaging, and diagnostic applications.

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Year:  2016        PMID: 27960310      PMCID: PMC6377280          DOI: 10.1021/jacs.6b09706

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  A photoinducible 1,3-dipolar cycloaddition reaction for rapid, selective modification of tetrazole-containing proteins.

Authors:  Wenjiao Song; Yizhong Wang; Jun Qu; Michael M Madden; Qing Lin
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  Chemoselective probes for metabolite enrichment and profiling.

Authors:  Erin E Carlson; Benjamin F Cravatt
Journal:  Nat Methods       Date:  2007-04-08       Impact factor: 28.547

3.  Selective functionalization of a genetically encoded alkene-containing protein via "photoclick chemistry" in bacterial cells.

Authors:  Wenjiao Song; Yizhong Wang; Jun Qu; Qing Lin
Journal:  J Am Chem Soc       Date:  2008-07-02       Impact factor: 15.419

4.  Silencing of the VHL tumor-suppressor gene by DNA methylation in renal carcinoma.

Authors:  J G Herman; F Latif; Y Weng; M I Lerman; B Zbar; S Liu; D Samid; D S Duan; J R Gnarra; W M Linehan
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

5.  Design of oligothiophene-based tetrazoles for laser-triggered photoclick chemistry in living cells.

Authors:  Peng An; Zhipeng Yu; Qing Lin
Journal:  Chem Commun (Camb)       Date:  2013-11-04       Impact factor: 6.222

6.  Fast alkene functionalization in vivo by Photoclick chemistry: HOMO lifting of nitrile imine dipoles.

Authors:  Yizhong Wang; Wenjiao Song; Wen J Hu; Qing Lin
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 7.  Understanding the Warburg effect: the metabolic requirements of cell proliferation.

Authors:  Matthew G Vander Heiden; Lewis C Cantley; Craig B Thompson
Journal:  Science       Date:  2009-05-22       Impact factor: 47.728

Review 8.  Metabolic dysregulation in monogenic disorders and cancer - finding method in madness.

Authors:  Ayelet Erez; Ralph J DeBerardinis
Journal:  Nat Rev Cancer       Date:  2015-06-18       Impact factor: 69.800

9.  Inhibition of α-KG-dependent histone and DNA demethylases by fumarate and succinate that are accumulated in mutations of FH and SDH tumor suppressors.

Authors:  Mengtao Xiao; Hui Yang; Wei Xu; Shenghong Ma; Huaipeng Lin; Honguang Zhu; Lixia Liu; Ying Liu; Chen Yang; Yanhui Xu; Shimin Zhao; Dan Ye; Yue Xiong; Kun-Liang Guan
Journal:  Genes Dev       Date:  2012-06-07       Impact factor: 12.890

Review 10.  Bright building blocks for chemical biology.

Authors:  Luke D Lavis; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2014-03-20       Impact factor: 5.100

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  6 in total

Review 1.  Epigenetic regulation by endogenous metabolite pharmacology.

Authors:  Rhushikesh A Kulkarni; David C Montgomery; Jordan L Meier
Journal:  Curr Opin Chem Biol       Date:  2019-03-15       Impact factor: 8.822

2.  Bioorthogonal oncometabolite ligation.

Authors:  Chloe A Briney; Susana Najera; Jordan L Meier
Journal:  Methods Enzymol       Date:  2019-03-14       Impact factor: 1.600

3.  Photoinducible Oncometabolite Detection.

Authors:  Rhushikesh A Kulkarni; Chloe A Briney; Daniel R Crooks; Sarah E Bergholtz; Chandrasekhar Mushti; Stephen J Lockett; Andrew N Lane; Teresa W-M Fan; Rolf E Swenson; W Marston Linehan; Jordan L Meier
Journal:  Chembiochem       Date:  2018-12-13       Impact factor: 3.164

Review 4.  Light-Triggered Click Chemistry.

Authors:  Gangam Srikanth Kumar; Qing Lin
Journal:  Chem Rev       Date:  2020-10-26       Impact factor: 72.087

Review 5.  The Future of Bioorthogonal Chemistry.

Authors:  Neal K Devaraj
Journal:  ACS Cent Sci       Date:  2018-07-23       Impact factor: 14.553

6.  Light-Activatable, 2,5-Disubstituted Tetrazoles for the Proteome-wide Profiling of Aspartates and Glutamates in Living Bacteria.

Authors:  Kathrin Bach; Bert L H Beerkens; Patrick R A Zanon; Stephan M Hacker
Journal:  ACS Cent Sci       Date:  2020-04-13       Impact factor: 14.553

  6 in total

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