Literature DB >> 27453919

High-throughput evaluation of synthetic metabolic pathways.

Justin R Klesmith1, Timothy A Whitehead2.   

Abstract

A central challenge in the field of metabolic engineering is the efficient identification of a metabolic pathway genotype that maximizes specific productivity over a robust range of process conditions. Here we review current methods for optimizing specific productivity of metabolic pathways in living cells. New tools for library generation, computational analysis of pathway sequence-flux space, and high-throughput screening and selection techniques are discussed.

Entities:  

Keywords:  Computational Optimization; Deep Mutational Scanning; Metabolic Engineering; Protein Engineering; Synthetic Biology

Year:  2015        PMID: 27453919      PMCID: PMC4955671          DOI: 10.1142/S233954781640001X

Source DB:  PubMed          Journal:  Technology (Singap World Sci)


  84 in total

Review 1.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

2.  A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly.

Authors:  Michael E Lee; William C DeLoache; Bernardo Cervantes; John E Dueber
Journal:  ACS Synth Biol       Date:  2015-05-01       Impact factor: 5.110

3.  Microbial engineering for the production of advanced biofuels.

Authors:  Pamela P Peralta-Yahya; Fuzhong Zhang; Stephen B del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

4.  Employing a combinatorial expression approach to characterize xylose utilization in Saccharomyces cerevisiae.

Authors:  Luke N Latimer; Michael E Lee; Daniel Medina-Cleghorn; Rebecca A Kohnz; Daniel K Nomura; John E Dueber
Journal:  Metab Eng       Date:  2014-06-13       Impact factor: 9.783

5.  Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate.

Authors:  Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  Biotechnol Bioeng       Date:  2010-06-15       Impact factor: 4.530

6.  Rewiring yeast sugar transporter preference through modifying a conserved protein motif.

Authors:  Eric M Young; Alice Tong; Hang Bui; Caitlin Spofford; Hal S Alper
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-16       Impact factor: 11.205

7.  High-resolution sequence-function mapping of full-length proteins.

Authors:  Caitlin A Kowalsky; Justin R Klesmith; James A Stapleton; Vince Kelly; Nolan Reichkitzer; Timothy A Whitehead
Journal:  PLoS One       Date:  2015-03-19       Impact factor: 3.240

Review 8.  Applications of genome-scale metabolic reconstructions.

Authors:  Matthew A Oberhardt; Bernhard Ø Palsson; Jason A Papin
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

9.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

10.  Investigating xylose metabolism in recombinant Saccharomyces cerevisiae via 13C metabolic flux analysis.

Authors:  Xueyang Feng; Huimin Zhao
Journal:  Microb Cell Fact       Date:  2013-11-18       Impact factor: 5.328

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  1 in total

1.  Trade-offs between enzyme fitness and solubility illuminated by deep mutational scanning.

Authors:  Justin R Klesmith; John-Paul Bacik; Emily E Wrenbeck; Ryszard Michalczyk; Timothy A Whitehead
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-14       Impact factor: 11.205

  1 in total

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