Literature DB >> 25871405

A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly.

Michael E Lee1,2, William C DeLoache1,2, Bernardo Cervantes1, John E Dueber1,3,4.   

Abstract

Saccharomyces cerevisiae is an increasingly attractive host for synthetic biology because of its long history in industrial fermentations. However, until recently, most synthetic biology systems have focused on bacteria. While there is a wealth of resources and literature about the biology of yeast, it can be daunting to navigate and extract the tools needed for engineering applications. Here we present a versatile engineering platform for yeast, which contains both a rapid, modular assembly method and a basic set of characterized parts. This platform provides a framework in which to create new designs, as well as data on promoters, terminators, degradation tags, and copy number to inform those designs. Additionally, we describe genome-editing tools for making modifications directly to the yeast chromosomes, which we find preferable to plasmids due to reduced variability in expression. With this toolkit, we strive to simplify the process of engineering yeast by standardizing the physical manipulations and suggesting best practices that together will enable more straightforward translation of materials and data from one group to another. Additionally, by relieving researchers of the burden of technical details, they can focus on higher-level aspects of experimental design.

Entities:  

Keywords:  MoClo; characterized parts; golden gate; toolkit; yeast

Mesh:

Substances:

Year:  2015        PMID: 25871405     DOI: 10.1021/sb500366v

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  191 in total

1.  High-throughput characterization of protein-protein interactions by reprogramming yeast mating.

Authors:  David Younger; Stephanie Berger; David Baker; Eric Klavins
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-31       Impact factor: 11.205

2.  A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy.

Authors:  Robert Chen; Harneet S Rishi; Vladimir Potapov; Masaki R Yamada; Vincent J Yeh; Thomas Chow; Celia L Cheung; Austin T Jones; Terry D Johnson; Amy E Keating; William C DeLoache; John E Dueber
Journal:  ACS Synth Biol       Date:  2015-07-15       Impact factor: 5.110

3.  A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae.

Authors:  Hengqian Ren; Pingfan Hu; Huimin Zhao
Journal:  Biotechnol Bioeng       Date:  2017-06-05       Impact factor: 4.530

4.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

5.  Engineering control of bacterial cellulose production using a genetic toolkit and a new cellulose-producing strain.

Authors:  Michael Florea; Henrik Hagemann; Gabriella Santosa; James Abbott; Chris N Micklem; Xenia Spencer-Milnes; Laura de Arroyo Garcia; Despoina Paschou; Christopher Lazenbatt; Deze Kong; Haroon Chughtai; Kirsten Jensen; Paul S Freemont; Richard Kitney; Benjamin Reeve; Tom Ellis
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-31       Impact factor: 11.205

6.  A part toolbox to tune genetic expression in Bacillus subtilis.

Authors:  Sarah Guiziou; Vincent Sauveplane; Hung-Ju Chang; Caroline Clerté; Nathalie Declerck; Matthieu Jules; Jerome Bonnet
Journal:  Nucleic Acids Res       Date:  2016-07-08       Impact factor: 16.971

7.  Nucleosome Positioning Regulates the Establishment, Stability, and Inheritance of Heterochromatin in Saccharomyces cerevisiae.

Authors:  Daniel S Saxton; Jasper Rine
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-19       Impact factor: 11.205

8.  Employing a biochemical protecting group for a sustainable indigo dyeing strategy.

Authors:  Tammy M Hsu; Ditte H Welner; Zachary N Russ; Bernardo Cervantes; Ramya L Prathuri; Paul D Adams; John E Dueber
Journal:  Nat Chem Biol       Date:  2018-01-08       Impact factor: 15.040

9.  High-throughput evaluation of synthetic metabolic pathways.

Authors:  Justin R Klesmith; Timothy A Whitehead
Journal:  Technology (Singap World Sci)       Date:  2015-12-16

10.  Combinatorial metabolic pathway assembly in the yeast genome with RNA-guided Cas9.

Authors:  Steve F EauClaire; Jianzhong Zhang; Corban Gregory Rivera; Lixuan L Huang
Journal:  J Ind Microbiol Biotechnol       Date:  2016-05-02       Impact factor: 3.346

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