Literature DB >> 27446714

Learning layer-specific edges for segmenting retinal layers with large deformations.

S P K Karri1, Debjani Chakraborthi2, Jyotirmoy Chatterjee1.   

Abstract

We present an algorithm for layer-specific edge detection in retinal optical coherence tomography images through a structured learning algorithm to reinforce traditional graph-based retinal layer segmentation. The proposed algorithm simultaneously identifies individual layers and their corresponding edges, resulting in the computation of layer-specific edges in 1 second. These edges augment classical dynamic programming based segmentation under layer deformation, shadow artifacts noise, and without heuristics or prior knowledge. We considered Duke's online data set containing 110 B-scans of 10 diabetic macular edema subjects with 8 retinal layers annotated by two experts for experimentation, and achieved a mean distance error of 1.38 pixels whereas that of the state-of-the-art was 1.68 pixels.

Entities:  

Keywords:  (100.6950) Tomographic image processing; (170.1610) Clinical applications; (170.4500) Optical coherence tomography; (170.6935) Tissue characterization

Year:  2016        PMID: 27446714      PMCID: PMC4948638          DOI: 10.1364/BOE.7.002888

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  21 in total

1.  Ultrahigh resolution optical coherence tomography of the monkey fovea. Identification of retinal sublayers by correlation with semithin histology sections.

Authors:  Elisabeth M Anger; Angelika Unterhuber; Boris Hermann; Harald Sattmann; Christian Schubert; James E Morgan; Alan Cowey; Peter K Ahnelt; Wolfgang Drexler
Journal:  Exp Eye Res       Date:  2004-06       Impact factor: 3.467

2.  Quantitative classification of eyes with and without intermediate age-related macular degeneration using optical coherence tomography.

Authors:  Sina Farsiu; Stephanie J Chiu; Rachelle V O'Connell; Francisco A Folgar; Eric Yuan; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2013-08-29       Impact factor: 12.079

3.  Graph-based multi-surface segmentation of OCT data using trained hard and soft constraints.

Authors:  Pascal A Dufour; Lala Ceklic; Hannan Abdillahi; Simon Schröder; Sandro De Dzanet; Ute Wolf-Schnurrbusch; Jens Kowal
Journal:  IEEE Trans Med Imaging       Date:  2012-10-18       Impact factor: 10.048

Review 4.  Optical coherence tomography today: speed, contrast, and multimodality.

Authors:  Wolfgang Drexler; Mengyang Liu; Abhishek Kumar; Tschackad Kamali; Angelika Unterhuber; Rainer A Leitgeb
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

5.  Probabilistic intra-retinal layer segmentation in 3-D OCT images using global shape regularization.

Authors:  Fabian Rathke; Stefan Schmidt; Christoph Schnörr
Journal:  Med Image Anal       Date:  2014-04-13       Impact factor: 8.545

6.  Evaluation of retinal nerve fiber layer, optic nerve head, and macular thickness measurements for glaucoma detection using optical coherence tomography.

Authors:  Felipe A Medeiros; Linda M Zangwill; Christopher Bowd; Roberto M Vessani; Remo Susanna; Robert N Weinreb
Journal:  Am J Ophthalmol       Date:  2005-01       Impact factor: 5.258

Review 7.  State-of-the-art retinal optical coherence tomography.

Authors:  Wolfgang Drexler; James G Fujimoto
Journal:  Prog Retin Eye Res       Date:  2007-08-11       Impact factor: 21.198

8.  Detection of glaucoma progression by assessment of segmented macular thickness data obtained using spectral domain optical coherence tomography.

Authors:  Jung Hwa Na; Kyung Rim Sung; Seunghee Baek; Yoon Jeon Kim; Mary K Durbin; Hye Jin Lee; Hwang Ki Kim; Yong Ho Sohn
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-06-20       Impact factor: 4.799

9.  A comparison of retinal nerve fiber layer (RNFL) thickness obtained with frequency and time domain optical coherence tomography (OCT).

Authors:  Donald C Hood; Ali S Raza; Kristine Y Kay; Shlomit F Sandler; Daiyan Xin; Robert Ritch; Jeffrey M Liebmann
Journal:  Opt Express       Date:  2009-03-02       Impact factor: 3.894

10.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.

Authors:  Stephanie J Chiu; Xiao T Li; Peter Nicholas; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

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  10 in total

1.  Robust total retina thickness segmentation in optical coherence tomography images using convolutional neural networks.

Authors:  Freerk G Venhuizen; Bram van Ginneken; Bart Liefers; Mark J J P van Grinsven; Sascha Fauser; Carel Hoyng; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-06-16       Impact factor: 3.732

2.  Transfer learning based classification of optical coherence tomography images with diabetic macular edema and dry age-related macular degeneration.

Authors:  S P K Karri; Debjani Chakraborty; Jyotirmoy Chatterjee
Journal:  Biomed Opt Express       Date:  2017-01-04       Impact factor: 3.732

3.  Joint retinal layer and fluid segmentation in OCT scans of eyes with severe macular edema using unsupervised representation and auto-context.

Authors:  Alessio Montuoro; Sebastian M Waldstein; Bianca S Gerendas; Ursula Schmidt-Erfurth; Hrvoje Bogunović
Journal:  Biomed Opt Express       Date:  2017-02-27       Impact factor: 3.732

4.  Fully Convolutional Boundary Regression for Retina OCT Segmentation.

Authors:  Yufan He; Aaron Carass; Yihao Liu; Bruno M Jedynak; Sharon D Solomon; Shiv Saidha; Peter A Calabresi; Jerry L Prince
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

5.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.

Authors:  Leyuan Fang; David Cunefare; Chong Wang; Robyn H Guymer; Shutao Li; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2017-04-27       Impact factor: 3.732

6.  ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks.

Authors:  Abhijit Guha Roy; Sailesh Conjeti; Sri Phani Krishna Karri; Debdoot Sheet; Amin Katouzian; Christian Wachinger; Nassir Navab
Journal:  Biomed Opt Express       Date:  2017-07-13       Impact factor: 3.732

7.  Automatic segmentation of OCT retinal boundaries using recurrent neural networks and graph search.

Authors:  Jason Kugelman; David Alonso-Caneiro; Scott A Read; Stephen J Vincent; Michael J Collins
Journal:  Biomed Opt Express       Date:  2018-10-26       Impact factor: 3.732

8.  Automated Deformation-Based Analysis of 3D Optical Coherence Tomography in Diabetic Retinopathy.

Authors:  Maziyar M Khansari; Jiong Zhang; Yuchuan Qiao; Jin Kyu Gahm; Mona Sharifi Sarabi; Amir H Kashani; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2019-06-24       Impact factor: 10.048

Review 9.  Artificial intelligence in OCT angiography.

Authors:  Tristan T Hormel; Thomas S Hwang; Steven T Bailey; David J Wilson; David Huang; Yali Jia
Journal:  Prog Retin Eye Res       Date:  2021-03-22       Impact factor: 21.198

10.  Structured layer surface segmentation for retina OCT using fully convolutional regression networks.

Authors:  Yufan He; Aaron Carass; Yihao Liu; Bruno M Jedynak; Sharon D Solomon; Shiv Saidha; Peter A Calabresi; Jerry L Prince
Journal:  Med Image Anal       Date:  2020-10-14       Impact factor: 8.545

  10 in total

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