Literature DB >> 27425620

Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.

Thomas Liebmann1, Nicolas Renier2, Karima Bettayeb1, Paul Greengard1, Marc Tessier-Lavigne2, Marc Flajolet3.   

Abstract

Amyloidosis is a major problem in over one hundred diseases, including Alzheimer's disease (AD). Using the iDISCO visualization method involving targeted molecular labeling, tissue clearing, and light-sheet microscopy, we studied plaque formation in the intact AD mouse brain at up to 27 months of age. We visualized amyloid plaques in 3D together with tau, microglia, and vasculature. Volume imaging coupled to automated detection and mapping enables precise and fast quantification of plaques within the entire intact mouse brain. The present methodology is also applicable to analysis of frozen human brain samples without specialized preservation. Remarkably, amyloid plaques in human brain tissues showed greater 3D complexity and surprisingly large three-dimensional amyloid patterns, or TAPs. The ability to visualize amyloid in 3D, especially in the context of their micro-environment, and the discovery of large TAPs may have important scientific and medical implications.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D amyloid patterns (TAPs); 3D rendering; Alzheimer’s disease; ClearMap; Congo red; amyloid plaques; amyloidosis; brain clearing; iDISCO; microglia; tau

Mesh:

Substances:

Year:  2016        PMID: 27425620      PMCID: PMC5040352          DOI: 10.1016/j.celrep.2016.06.060

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  41 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  A conformation- and phosphorylation-dependent antibody recognizing the paired helical filaments of Alzheimer's disease.

Authors:  G A Jicha; E Lane; I Vincent; L Otvos; R Hoffmann; P Davies
Journal:  J Neurochem       Date:  1997-11       Impact factor: 5.372

3.  Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.

Authors:  Hiroshi Hama; Hiroshi Kurokawa; Hiroyuki Kawano; Ryoko Ando; Tomomi Shimogori; Hisayori Noda; Kiyoko Fukami; Asako Sakaue-Sawano; Atsushi Miyawaki
Journal:  Nat Neurosci       Date:  2011-08-30       Impact factor: 24.884

4.  Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R Ueda
Journal:  Cell       Date:  2014-04-17       Impact factor: 41.582

Review 5.  Mouse models for studying the formation and propagation of prions.

Authors:  Joel C Watts; Stanley B Prusiner
Journal:  J Biol Chem       Date:  2014-05-23       Impact factor: 5.157

Review 6.  Probing the biology of Alzheimer's disease in mice.

Authors:  Karen H Ashe; Kathleen R Zahs
Journal:  Neuron       Date:  2010-06-10       Impact factor: 17.173

7.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

8.  Cerebrovascular atherosclerosis correlates with Alzheimer pathology in neurodegenerative dementias.

Authors:  Mark Yarchoan; Sharon X Xie; Mitchel A Kling; Jon B Toledo; David A Wolk; Edward B Lee; Vivianna Van Deerlin; Virginia M-Y Lee; John Q Trojanowski; Steven E Arnold
Journal:  Brain       Date:  2012-11-30       Impact factor: 13.501

9.  Single-cell phenotyping within transparent intact tissue through whole-body clearing.

Authors:  Bin Yang; Jennifer B Treweek; Rajan P Kulkarni; Benjamin E Deverman; Chun-Kan Chen; Eric Lubeck; Sheel Shah; Long Cai; Viviana Gradinaru
Journal:  Cell       Date:  2014-07-31       Impact factor: 41.582

10.  Characterization of a Novel Mouse Model of Alzheimer's Disease--Amyloid Pathology and Unique β-Amyloid Oligomer Profile.

Authors:  Peng Liu; Jennifer B Paulson; Colleen L Forster; Samantha L Shapiro; Karen H Ashe; Kathleen R Zahs
Journal:  PLoS One       Date:  2015-05-06       Impact factor: 3.240

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  63 in total

Review 1.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

2.  Tissue Optical Clearing for Biomedical Imaging: From In Vitro to In Vivo.

Authors:  Tingting Yu; Dongyu Li; Dan Zhu
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 3.  On the Usage of Brain Atlases in Neuroimaging Research.

Authors:  Andreas Hess; Rukun Hinz; Georgios A Keliris; Philipp Boehm-Sturm
Journal:  Mol Imaging Biol       Date:  2018-10       Impact factor: 3.488

4.  Cholinergic Neurons of the Medial Septum Are Crucial for Sensorimotor Gating.

Authors:  Junghee Jin; Jia Cheng; Ko-Woon Lee; Bushra Amreen; Kathryn A McCabe; Clark Pitcher; Thomas Liebmann; Paul Greengard; Marc Flajolet
Journal:  J Neurosci       Date:  2019-04-26       Impact factor: 6.167

5.  Parvalbumin-Positive Neuron Loss and Amyloid-β Deposits in the Frontal Cortex of Alzheimer's Disease-Related Mice.

Authors:  Farhan Ali; Stephanie L Baringer; Arianna Neal; Esther Y Choi; Alex C Kwan
Journal:  J Alzheimers Dis       Date:  2019       Impact factor: 4.472

6.  Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer's disease.

Authors:  Jennifer D Whitesell; Alex R Buckley; Joseph E Knox; Leonard Kuan; Nile Graddis; Andrew Pelos; Alice Mukora; Wayne Wakeman; Phillip Bohn; Anh Ho; Karla E Hirokawa; Julie A Harris
Journal:  J Comp Neurol       Date:  2018-12-04       Impact factor: 3.215

Review 7.  Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Hiroki R Ueda; Hans-Ulrich Dodt; Pavel Osten; Michael N Economo; Jayaram Chandrashekar; Philipp J Keller
Journal:  Neuron       Date:  2020-05-06       Impact factor: 17.173

8.  Optimization of immunolabeling and clearing techniques for indelibly labeled memory traces.

Authors:  Ina P Pavlova; Shannon C Shipley; Marcos Lanio; René Hen; Christine A Denny
Journal:  Hippocampus       Date:  2018-07       Impact factor: 3.899

9.  Neuroprotective Effects of the Amylin Analog, Pramlintide, on Alzheimer's Disease Are Associated with Oxidative Stress Regulation Mechanisms.

Authors:  Sarah Patrick; Rachel Corrigan; John Grizzanti; Megan Mey; Jeff Blair; Merce Pallas; Antonio Camins; Hyoung-Gon Lee; Gemma Casadesus
Journal:  J Alzheimers Dis       Date:  2019       Impact factor: 4.472

Review 10.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

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