Literature DB >> 30094652

On the Usage of Brain Atlases in Neuroimaging Research.

Andreas Hess1, Rukun Hinz2, Georgios A Keliris2, Philipp Boehm-Sturm3,4.   

Abstract

Brain atlases play a key role in modern neuroimaging analysis of brain structure and function. We review available atlas databases for humans and animals and illustrate common state-of-the-art workflows in neuroimaging research based on image registration. Advances in noninvasive imaging methods, 3D ex vivo microscopy, and image processing are summarized which will eventually close the current resolution gap between brain atlases based on conventional 2D histology and those based on 3D in vivo imaging.

Entities:  

Keywords:  Brain atlas; Image registration; Neuroimaging; Vasculature

Mesh:

Year:  2018        PMID: 30094652     DOI: 10.1007/s11307-018-1259-y

Source DB:  PubMed          Journal:  Mol Imaging Biol        ISSN: 1536-1632            Impact factor:   3.488


  108 in total

1.  Voxel-based lesion-symptom mapping.

Authors:  Elizabeth Bates; Stephen M Wilson; Ayse Pinar Saygin; Frederic Dick; Martin I Sereno; Robert T Knight; Nina F Dronkers
Journal:  Nat Neurosci       Date:  2003-05       Impact factor: 24.884

2.  A rat brain MRI template with digital stereotaxic atlas of fine anatomical delineations in paxinos space and its automated application in voxel-wise analysis.

Authors:  Binbin Nie; Kewei Chen; Shujun Zhao; Junhua Liu; Xiaochun Gu; Qunli Yao; Jiaojie Hui; Zhijun Zhang; Gaojun Teng; Chunjie Zhao; Baoci Shan
Journal:  Hum Brain Mapp       Date:  2012-01-30       Impact factor: 5.038

3.  Three-dimensional reconstruction of the equine ovary.

Authors:  J Kimura; Y Hirano; S Takemoto; Y Nambo; T Ishinazaka; R Himeno; T Mishima; S Tsumagari; H Yokota
Journal:  Anat Histol Embryol       Date:  2005-02       Impact factor: 1.114

4.  3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution.

Authors:  Jingpeng Wu; Yong He; Zhongqin Yang; Congdi Guo; Qingming Luo; Wei Zhou; Shangbin Chen; Anan Li; Benyi Xiong; Tao Jiang; Hui Gong
Journal:  Neuroimage       Date:  2013-10-31       Impact factor: 6.556

5.  A digital 3D atlas of the marmoset brain based on multi-modal MRI.

Authors:  Cirong Liu; Frank Q Ye; Cecil Chern-Chyi Yen; John D Newman; Daniel Glen; David A Leopold; Afonso C Silva
Journal:  Neuroimage       Date:  2017-12-05       Impact factor: 6.556

6.  CT atlas of the dog brain.

Authors:  H H Kaufman; G Cohen; T F Glass; J D Huchton; J L Pruessner; P T Ostrow; A M Andia-Waltenbaugh; M Dujovny
Journal:  J Comput Assist Tomogr       Date:  1981-08       Impact factor: 1.826

7.  A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.

Authors:  Y Ma; P R Hof; S C Grant; S J Blackband; R Bennett; L Slatest; M D McGuigan; H Benveniste
Journal:  Neuroscience       Date:  2005-09-13       Impact factor: 3.590

8.  A template for spatial normalisation of MR images of the rat brain.

Authors:  Petra Schweinhardt; Peter Fransson; Lars Olson; Christian Spenger; Jesper L R Andersson
Journal:  J Neurosci Methods       Date:  2003-10-30       Impact factor: 2.390

9.  The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease.

Authors:  Alexandra Badea; Lauren Kane; Robert J Anderson; Yi Qi; Mark Foster; Gary P Cofer; Neil Medvitz; Anne F Buckley; Andreas K Badea; William C Wetsel; Carol A Colton
Journal:  Neuroimage       Date:  2016-08-10       Impact factor: 6.556

10.  Waxholm Space atlas of the Sprague Dawley rat brain.

Authors:  Eszter A Papp; Trygve B Leergaard; Evan Calabrese; G Allan Johnson; Jan G Bjaalie
Journal:  Neuroimage       Date:  2014-04-12       Impact factor: 6.556

View more
  6 in total

1.  Flexible annotation atlas of the mouse brain: combining and dividing brain structures of the Allen Brain Atlas while maintaining anatomical hierarchy.

Authors:  Norio Takata; Nobuhiko Sato; Yuji Komaki; Hideyuki Okano; Kenji F Tanaka
Journal:  Sci Rep       Date:  2021-03-18       Impact factor: 4.379

Review 2.  Evolution of Human Brain Atlases in Terms of Content, Applications, Functionality, and Availability.

Authors:  Wieslaw L Nowinski
Journal:  Neuroinformatics       Date:  2021-01

Review 3.  Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain.

Authors:  Kyra T Newmaster; Fae A Kronman; Yuan-Ting Wu; Yongsoo Kim
Journal:  Front Neuroanat       Date:  2022-01-14       Impact factor: 3.856

4.  Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas.

Authors:  Wieslaw L Nowinski
Journal:  Neuroinformatics       Date:  2021-11-26

5.  A multimodal computational pipeline for 3D histology of the human brain.

Authors:  Matteo Mancini; Adrià Casamitjana; Loic Peter; Eleanor Robinson; Shauna Crampsie; David L Thomas; Janice L Holton; Zane Jaunmuktane; Juan Eugenio Iglesias
Journal:  Sci Rep       Date:  2020-08-14       Impact factor: 4.379

6.  A framework for multi-component analysis of diffusion MRI data over the neonatal period.

Authors:  Maximilian Pietsch; Daan Christiaens; Jana Hutter; Lucilio Cordero-Grande; Anthony N Price; Emer Hughes; A David Edwards; Joseph V Hajnal; Serena J Counsell; J-Donald Tournier
Journal:  Neuroimage       Date:  2018-11-02       Impact factor: 6.556

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.