Literature DB >> 27420774

Biochemical and Structural Characterization of MycCI, a Versatile P450 Biocatalyst from the Mycinamicin Biosynthetic Pathway.

Matthew D DeMars1, Fang Sheng2, Sung Ryeol Park1, Andrew N Lowell1, Larissa M Podust2, David H Sherman1,3,4,5.   

Abstract

Cytochrome P450 monooxygenases (P450s) are some of nature's most ubiquitous and versatile enzymes for performing oxidative metabolic transformations. Their unmatched ability to selectively functionalize inert C-H bonds has led to their increasing employment in academic and industrial settings for the production of fine and commodity chemicals. Many of the most interesting and potentially biocatalytically useful P450s come from microorganisms, where they catalyze key tailoring reactions in natural product biosynthetic pathways. While most of these enzymes act on structurally complex pathway intermediates with high selectivity, they often exhibit narrow substrate scope, thus limiting their broader application. In the present study, we investigated the reactivity of the P450 MycCI from the mycinamicin biosynthetic pathway toward a variety of macrocyclic compounds and discovered that the enzyme exhibits appreciable activity on several 16-membered ring macrolactones independent of their glycosylation state. These results were corroborated by performing equilibrium substrate binding experiments, steady-state kinetics studies, and X-ray crystallographic analysis of MycCI bound to its native substrate mycinamicin VIII. We also characterized TylHI, a homologous P450 from the tylosin pathway, and showed that its substrate scope is severely restricted compared to MycCI. Thus, the ability of the latter to hydroxylate both macrocyclic aglycones and macrolides sets it apart from related biosynthetic P450s and highlights its potential for developing novel P450 biocatalysts with broad substrate scope and high regioselectivity.

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Year:  2016        PMID: 27420774      PMCID: PMC5026600          DOI: 10.1021/acschembio.6b00479

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  70 in total

1.  Azole drugs trap cytochrome P450 EryK in alternative conformational states.

Authors:  Linda Celeste Montemiglio; Stefano Gianni; Beatrice Vallone; Carmelinda Savino
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

2.  Substrate specificity of the macrolide-glycosylating enzyme pair DesVII/DesVIII: opportunities, limitations, and mechanistic hypotheses.

Authors:  Svetlana A Borisova; Changsheng Zhang; Haruko Takahashi; Hua Zhang; Alexander W Wong; Jon S Thorson; Hung-wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-21       Impact factor: 15.336

3.  Cytochromes P450 as useful biocatalysts: addressing the limitations.

Authors:  Elaine O'Reilly; Valentin Köhler; Sabine L Flitsch; Nicholas J Turner
Journal:  Chem Commun (Camb)       Date:  2011-01-24       Impact factor: 6.222

4.  Functional characterization of CYP107W1 from Streptomyces avermitilis and biosynthesis of macrolide oligomycin A.

Authors:  Songhee Han; Tan-Viet Pham; Joo-Hwan Kim; Young-Ran Lim; Hyoung-Goo Park; Gun-Su Cha; Chul-Ho Yun; Young-Jin Chun; Lin-Woo Kang; Donghak Kim
Journal:  Arch Biochem Biophys       Date:  2015-04-04       Impact factor: 4.013

5.  Biosynthesis of tylosin: oxidations of 5-O-mycaminosylprotylonolide at C-20 and C-23 with a cell-free extract from Streptomyces fradiae.

Authors:  S Omura; H Tanaka; M Tsukui
Journal:  Biochem Biophys Res Commun       Date:  1982-07-30       Impact factor: 3.575

Review 6.  Cytochromes P450: exploiting diversity and enabling application as biocatalysts.

Authors:  Gideon Grogan
Journal:  Curr Opin Chem Biol       Date:  2010-12-07       Impact factor: 8.822

7.  Function of cytochrome P450 enzymes MycCI and MycG in Micromonospora griseorubida, a producer of the macrolide antibiotic mycinamicin.

Authors:  Yojiro Anzai; Shu-ichi Tsukada; Ayami Sakai; Ryohei Masuda; Chie Harada; Ayaka Domeki; Shengying Li; Kenji Kinoshita; David H Sherman; Fumio Kato
Journal:  Antimicrob Agents Chemother       Date:  2012-04-30       Impact factor: 5.191

Review 8.  Cytochrome P450 enzymes in the generation of commercial products.

Authors:  F Peter Guengerich
Journal:  Nat Rev Drug Discov       Date:  2002-05       Impact factor: 84.694

9.  The cytochrome p450 homepage.

Authors:  David R Nelson
Journal:  Hum Genomics       Date:  2009-10       Impact factor: 4.639

Review 10.  Hydrocarbon hydroxylation by cytochrome P450 enzymes.

Authors:  Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

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  8 in total

1.  Molecular Basis of Iterative C─H Oxidation by TamI, a Multifunctional P450 monooxygenase from the Tirandamycin Biosynthetic Pathway.

Authors:  Sean A Newmister; Kinshuk Raj Srivastava; Rosa V Espinoza; Kersti Caddell Haatveit; Yogan Khatri; Rachel M Martini; Marc Garcia-Borràs; Larissa M Podust; K N Houk; David H Sherman
Journal:  ACS Catal       Date:  2020-11-04       Impact factor: 13.084

Review 2.  Enzymatic CH functionalizations for natural product synthesis.

Authors:  Fuzhuo Li; Xiao Zhang; Hans Renata
Journal:  Curr Opin Chem Biol       Date:  2018-09-27       Impact factor: 8.822

Review 3.  Cytochromes P450 for natural product biosynthesis in Streptomyces: sequence, structure, and function.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang; Ming Ma; Ben Shen
Journal:  Nat Prod Rep       Date:  2017-08-30       Impact factor: 13.423

4.  Exploring the molecular basis for substrate specificity in homologous macrolide biosynthetic cytochromes P450.

Authors:  Matthew D DeMars; Nathan L Samora; Song Yang; Marc Garcia-Borràs; Jacob N Sanders; K N Houk; Larissa M Podust; David H Sherman
Journal:  J Biol Chem       Date:  2019-09-05       Impact factor: 5.157

5.  Solution Conformations and Dynamics of Substrate-Bound Cytochrome P450 MycG.

Authors:  Drew R Tietz; Larissa M Podust; David H Sherman; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2017-05-16       Impact factor: 3.162

6.  Chemoenzymatic Total Synthesis and Structural Diversification of Tylactone-Based Macrolide Antibiotics through Late-Stage Polyketide Assembly, Tailoring, and C-H Functionalization.

Authors:  Andrew N Lowell; Matthew D DeMars; Samuel T Slocum; Fengan Yu; Krithika Anand; Joseph A Chemler; Nisha Korakavi; Jennifer K Priessnitz; Sung Ryeol Park; Aaron A Koch; Pamela J Schultz; David H Sherman
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

7.  Chemoenzymatic synthesis of fluorinated polyketides.

Authors:  Alexander Rittner; Mirko Joppe; Jennifer J Schmidt; Lara Maria Mayer; Simon Reiners; Elia Heid; Dietmar Herzberg; David H Sherman; Martin Grininger
Journal:  Nat Chem       Date:  2022-07-25       Impact factor: 24.274

Review 8.  P450 Monooxygenases Enable Rapid Late-Stage Diversification of Natural Products via C-H Bond Activation.

Authors:  Nico D Fessner
Journal:  ChemCatChem       Date:  2019-02-15       Impact factor: 5.686

  8 in total

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