Literature DB >> 33569241

Molecular Basis of Iterative C─H Oxidation by TamI, a Multifunctional P450 monooxygenase from the Tirandamycin Biosynthetic Pathway.

Sean A Newmister1, Kinshuk Raj Srivastava1, Rosa V Espinoza1,2, Kersti Caddell Haatveit3, Yogan Khatri1, Rachel M Martini1, Marc Garcia-Borràs3, Larissa M Podust4, K N Houk3, David H Sherman1,5,6,7.   

Abstract

Biocatalysis offers an expanding and powerful strategy to construct and diversify complex molecules by C─H bond functionalization. Due to their high selectivity, enzymes have become an essential tool for C─H bond functionalization and offer complementary reactivity to small-molecule catalysts. Hemoproteins, particularly cytochromes P450, have proven effective for selective oxidation of unactivated C─H bonds. Previously, we reported the in vitro characterization of an oxidative tailoring cascade in which TamI, a multifunctional P450 functions co-dependently with the TamL flavoprotein to catalyze regio- and stereoselective hydroxylations and epoxidation to yield tirandamycin A and tirandamycin B. TamI follows a defined order including 1) C10 hydroxylation, 2) C11/C12 epoxidation, and 3) C18 hydroxylation. Here we present a structural, biochemical, and computational investigation of TamI to understand the molecular basis of its substrate binding, diverse reactivity, and specific reaction sequence. The crystal structure of TamI in complex with tirandamycin C together with molecular dynamics simulations and targeted mutagenesis suggest that hydrophobic interactions with the polyene chain of its natural substrate are critical for molecular recognition. QM calculations and molecular dynamics simulations of TamI with variant substrates provided detailed information on the molecular basis of sequential reactivity, and pattern of regio- and stereo-selectivity in catalyzing the three-step oxidative cascade.

Entities:  

Keywords:  antibiotics; biosynthesis; cytochrome P450; enzyme structure; molecular dynamics; natural product

Year:  2020        PMID: 33569241      PMCID: PMC7869845          DOI: 10.1021/acscatal.0c03248

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  42 in total

1.  THE CARBON MONOXIDE-BINDING PIGMENT OF LIVER MICROSOMES. I. EVIDENCE FOR ITS HEMOPROTEIN NATURE.

Authors:  T OMURA; R SATO
Journal:  J Biol Chem       Date:  1964-07       Impact factor: 5.157

2.  Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald.

Authors:  Romelia Salomon-Ferrer; Andreas W Götz; Duncan Poole; Scott Le Grand; Ross C Walker
Journal:  J Chem Theory Comput       Date:  2013-08-20       Impact factor: 6.006

3.  Selective oxidation of aliphatic C-H bonds in alkylphenols by a chemomimetic biocatalytic system.

Authors:  Lei Du; Sheng Dong; Xingwang Zhang; Chengying Jiang; Jingfei Chen; Lishan Yao; Xiao Wang; Xiaobo Wan; Xi Liu; Xinquan Wang; Shaohua Huang; Qiu Cui; Yingang Feng; Shuang-Jiang Liu; Shengying Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

4.  Fusarium Tri4 encodes a multifunctional oxygenase required for trichothecene biosynthesis.

Authors:  Susan P McCormick; Nancy J Alexander; Robert H Proctor
Journal:  Can J Microbiol       Date:  2006-07       Impact factor: 2.419

5.  Characterization of the kaurene oxidase CYP701A3, a multifunctional cytochrome P450 from gibberellin biosynthesis.

Authors:  Dana Morrone; Xiaoming Chen; Robert M Coates; Reuben J Peters
Journal:  Biochem J       Date:  2010-11-01       Impact factor: 3.857

6.  Tirandamycin, an inhibitor of bacterial ribonucleic acid polymerase.

Authors:  F Reusser
Journal:  Antimicrob Agents Chemother       Date:  1976-10       Impact factor: 5.191

7.  Structural insights into oxidation of medium-chain fatty acids and flavanone by myxobacterial cytochrome P450 CYP267B1.

Authors:  Ilona K Jóźwik; Martin Litzenburger; Yogan Khatri; Alexander Schifrin; Marco Girhard; Vlada Urlacher; Andy-Mark W H Thunnissen; Rita Bernhardt
Journal:  Biochem J       Date:  2018-09-11       Impact factor: 3.857

8.  An artificial metalloenzyme with the kinetics of native enzymes.

Authors:  P Dydio; H M Key; A Nazarenko; J Y-E Rha; V Seyedkazemi; D S Clark; J F Hartwig
Journal:  Science       Date:  2016-10-07       Impact factor: 47.728

9.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Tirandamycin biosynthesis is mediated by co-dependent oxidative enzymes.

Authors:  Jacob C Carlson; Shengying Li; Shamila S Gunatilleke; Yojiro Anzai; Douglas A Burr; Larissa M Podust; David H Sherman
Journal:  Nat Chem       Date:  2011-07-17       Impact factor: 24.427

View more
  2 in total

1.  Engineering P450 TamI as an Iterative Biocatalyst for Selective Late-Stage C-H Functionalization and Epoxidation of Tirandamycin Antibiotics.

Authors:  Rosa V Espinoza; Kersti Caddell Haatveit; S Wald Grossman; Jin Yi Tan; Caylie A McGlade; Yogan Khatri; Sean A Newmister; Jennifer J Schmidt; Marc Garcia-Borràs; John Montgomery; K N Houk; David H Sherman
Journal:  ACS Catal       Date:  2021-06-22       Impact factor: 13.084

2.  Co-Crystal Structure-Guided Optimization of Dual-Functional Small Molecules for Improving the Peroxygenase Activity of Cytochrome P450BM3.

Authors:  Xiangquan Qin; Yiping Jiang; Jie Chen; Fuquan Yao; Panxia Zhao; Longyi Jin; Zhiqi Cong
Journal:  Int J Mol Sci       Date:  2022-07-18       Impact factor: 6.208

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.