Literature DB >> 27419933

Transcriptional and epigenetic mechanisms of cellular reprogramming to induced pluripotency.

Mark van den Hurk1,2,3, Gunter Kenis1,2, Cedric Bardy3, Daniel L van den Hove1,2,4, Fred H Gage3, Harry W Steinbusch1,2, Bart P Rutten1,2.   

Abstract

Enforced ectopic expression of a cocktail of pluripotency-associated genes such as Oct4, Sox2, Klf4 and c-Myc can reprogram somatic cells into induced pluripotent stem cells (iPSCs). The remarkable proliferation ability of iPSCs and their aptitude to redifferentiate into any cell lineage makes these cells a promising tool for generating a variety of human tissue in vitro. Yet, pluripotency induction is an inefficient process, as cells undergoing reprogramming need to overcome developmentally imposed epigenetic barriers. Recent work has shed new light on the molecular mechanisms that drive the reprogramming of somatic cells to iPSCs. Here, we present current knowledge on the transcriptional and epigenetic regulation of pluripotency induction and discuss how variability in epigenetic states impacts iPSCs' inherent biological properties.

Entities:  

Keywords:  DNA methylation; chromatin; epigenetics; histone modifications; iPSC; induced pluripotent stem cell; pluripotency; reprogramming

Mesh:

Year:  2016        PMID: 27419933      PMCID: PMC5514980          DOI: 10.2217/epi-2016-0032

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  149 in total

1.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

2.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

3.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

4.  Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

Authors:  B H Ramsahoye; D Biniszkiewicz; F Lyko; V Clark; A P Bird; R Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

5.  Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency.

Authors:  Frederick Anokye-Danso; Chinmay M Trivedi; Denise Juhr; Mudit Gupta; Zheng Cui; Ying Tian; Yuzhen Zhang; Wenli Yang; Peter J Gruber; Jonathan A Epstein; Edward E Morrisey
Journal:  Cell Stem Cell       Date:  2011-04-08       Impact factor: 24.633

6.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

7.  Reprogramming of human somatic cells to pluripotency with defined factors.

Authors:  In-Hyun Park; Rui Zhao; Jason A West; Akiko Yabuuchi; Hongguang Huo; Tan A Ince; Paul H Lerou; M William Lensch; George Q Daley
Journal:  Nature       Date:  2007-12-23       Impact factor: 49.962

8.  In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Authors:  Marius Wernig; Alexander Meissner; Ruth Foreman; Tobias Brambrink; Manching Ku; Konrad Hochedlinger; Bradley E Bernstein; Rudolf Jaenisch
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

9.  MBD3, a component of the NuRD complex, facilitates chromatin alteration and deposition of epigenetic marks.

Authors:  Lluis Morey; Carmen Brenner; Francesco Fazi; Raffaella Villa; Arantxa Gutierrez; Marcus Buschbeck; Clara Nervi; Saverio Minucci; Francois Fuks; Luciano Di Croce
Journal:  Mol Cell Biol       Date:  2008-07-21       Impact factor: 4.272

10.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

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  7 in total

1.  The stem cell cocktail: neural reprogramming just got easier.

Authors:  Nora Bengoa-Vergniory; Robert Kypta
Journal:  Stem Cell Investig       Date:  2016-10-14

2.  Pluripotency gene network dynamics: System views from parametric analysis.

Authors:  Ilya R Akberdin; Nadezda A Omelyanchuk; Stanislav I Fadeev; Natalya E Leskova; Evgeniya A Oschepkova; Fedor V Kazantsev; Yury G Matushkin; Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  PLoS One       Date:  2018-03-29       Impact factor: 3.240

Review 3.  Human Induced Pluripotent Stem Cells: From Cell Origin, Genomic Stability, and Epigenetic Memory to Translational Medicine.

Authors:  Mareike S Poetsch; Anna Strano; Kaomei Guan
Journal:  Stem Cells       Date:  2022-06-22       Impact factor: 5.845

4.  Chimeric NANOG repressors inhibit glioblastoma growth in vivo in a context-dependent manner.

Authors:  Monika Kuciak; Christophe Mas; Isabel Borges; Pilar Sánchez-Gómez; Ariel Ruiz I Altaba
Journal:  Sci Rep       Date:  2019-03-07       Impact factor: 4.379

5.  Gene Modification and Three-Dimensional Scaffolds as Novel Tools to Allow the Use of Postnatal Thymic Epithelial Cells for Thymus Regeneration Approaches.

Authors:  Ileana Bortolomai; Monica Sandri; Elena Draghici; Elena Fontana; Elisabetta Campodoni; Genni Enza Marcovecchio; Francesca Ferrua; Laura Perani; Antonello Spinelli; Tamara Canu; Marco Catucci; Tiziano Di Tomaso; Lucia Sergi Sergi; Antonio Esposito; Angelo Lombardo; Luigi Naldini; Anna Tampieri; Georg A Hollander; Anna Villa; Marita Bosticardo
Journal:  Stem Cells Transl Med       Date:  2019-05-29       Impact factor: 6.940

6.  Enhanced Generation of Induced Cardiomyocytes Using a Small-Molecule Cocktail to Overcome Barriers to Cardiac Cellular Reprogramming.

Authors:  Vivek P Singh; Jaya Pratap Pinnamaneni; Aarthi Pugazenthi; Deepthi Sanagasetti; Megumi Mathison; Kai Wang; Jianchang Yang; Todd K Rosengart
Journal:  J Am Heart Assoc       Date:  2020-06-05       Impact factor: 5.501

7.  let-7 MicroRNA-Mediated Regulation of Shh Signaling and the Gene Regulatory Network Is Essential for Retina Regeneration.

Authors:  Simran Kaur; Shivangi Gupta; Mansi Chaudhary; Mohammad Anwar Khursheed; Soumitra Mitra; Akshai Janardhana Kurup; Rajesh Ramachandran
Journal:  Cell Rep       Date:  2018-05-01       Impact factor: 9.423

  7 in total

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