Literature DB >> 27418512

Chromatin remodeling inactivates activity genes and regulates neural coding.

Yue Yang1, Tomoko Yamada1, Kelly K Hill1,2, Martin Hemberg3, Naveen C Reddy1, Ha Y Cho1, Arden N Guthrie1, Anna Oldenborg1, Shane A Heiney4, Shogo Ohmae4, Javier F Medina4, Timothy E Holy1, Azad Bonni1.   

Abstract

Activity-dependent transcription influences neuronal connectivity, but the roles and mechanisms of inactivation of activity-dependent genes have remained poorly understood. Genome-wide analyses in the mouse cerebellum revealed that the nucleosome remodeling and deacetylase (NuRD) complex deposits the histone variant H2A.z at promoters of activity-dependent genes, thereby triggering their inactivation. Purification of translating messenger RNAs from synchronously developing granule neurons (Sync-TRAP) showed that conditional knockout of the core NuRD subunit Chd4 impairs inactivation of activity-dependent genes when neurons undergo dendrite pruning. Chd4 knockout or expression of NuRD-regulated activity genes impairs dendrite pruning. Imaging of behaving mice revealed hyperresponsivity of granule neurons to sensorimotor stimuli upon Chd4 knockout. Our findings define an epigenetic mechanism that inactivates activity-dependent transcription and regulates dendrite patterning and sensorimotor encoding in the brain.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27418512      PMCID: PMC4993111          DOI: 10.1126/science.aad4225

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  41 in total

1.  Cdh1-APC controls axonal growth and patterning in the mammalian brain.

Authors:  Yoshiyuki Konishi; Judith Stegmüller; Takahiko Matsuda; Shirin Bonni; Azad Bonni
Journal:  Science       Date:  2004-01-08       Impact factor: 47.728

2.  MTA3 and the Mi-2/NuRD complex regulate cell fate during B lymphocyte differentiation.

Authors:  Naoyuki Fujita; David L Jaye; Cissy Geigerman; Adil Akyildiz; Myesha R Mooney; Jeremy M Boss; Paul A Wade
Journal:  Cell       Date:  2004-10-01       Impact factor: 41.582

Review 3.  Functions of site-specific histone acetylation and deacetylation.

Authors:  Mona D Shahbazian; Michael Grunstein
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

Review 4.  The human Mi-2/NuRD complex and gene regulation.

Authors:  S A Denslow; P A Wade
Journal:  Oncogene       Date:  2007-08-13       Impact factor: 9.867

5.  A brief history of neuronal gene expression: regulatory mechanisms and cellular consequences.

Authors:  Zilong Qiu; Anirvan Ghosh
Journal:  Neuron       Date:  2008-11-06       Impact factor: 17.173

Review 6.  Chromatin remodelling during development.

Authors:  Lena Ho; Gerald R Crabtree
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

7.  H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Authors:  Menno P Creyghton; Styliani Markoulaki; Stuart S Levine; Jacob Hanna; Michael A Lodato; Ky Sha; Richard A Young; Rudolf Jaenisch; Laurie A Boyer
Journal:  Cell       Date:  2008-11-06       Impact factor: 41.582

8.  Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.

Authors:  Anthony Holtmaat; Tobias Bonhoeffer; David K Chow; Jyoti Chuckowree; Vincenzo De Paola; Sonja B Hofer; Mark Hübener; Tara Keck; Graham Knott; Wei-Chung A Lee; Ricardo Mostany; Tom D Mrsic-Flogel; Elly Nedivi; Carlos Portera-Cailliau; Karel Svoboda; Joshua T Trachtenberg; Linda Wilbrecht
Journal:  Nat Protoc       Date:  2009-07-16       Impact factor: 13.491

Review 9.  Histone variants: dynamic punctuation in transcription.

Authors:  Christopher M Weber; Steven Henikoff
Journal:  Genes Dev       Date:  2014-04-01       Impact factor: 11.361

10.  Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.

Authors:  Warren A Whyte; Steve Bilodeau; David A Orlando; Heather A Hoke; Garrett M Frampton; Charles T Foster; Shaun M Cowley; Richard A Young
Journal:  Nature       Date:  2012-02-01       Impact factor: 49.962

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  43 in total

1.  Sensorimotor Coding of Vermal Granule Neurons in the Developing Mammalian Cerebellum.

Authors:  Kelly H Markwalter; Yue Yang; Timothy E Holy; Azad Bonni
Journal:  J Neurosci       Date:  2019-06-24       Impact factor: 6.167

Review 2.  The chromatin landscape of neuronal plasticity.

Authors:  Margaret Herre; Erica Korb
Journal:  Curr Opin Neurobiol       Date:  2019-06-04       Impact factor: 6.627

Review 3.  Transcribing the connectome: roles for transcription factors and chromatin regulators in activity-dependent synapse development.

Authors:  Liang-Fu Chen; Allen S Zhou; Anne E West
Journal:  J Neurophysiol       Date:  2017-05-10       Impact factor: 2.714

4.  Epigenetic Advances in Behavioral and Brain Sciences have Relevance for Public Policy.

Authors:  Tania L Roth
Journal:  Policy Insights Behav Brain Sci       Date:  2017-08-24

5.  The Expanding Toolkit of Translating Ribosome Affinity Purification.

Authors:  Joseph D Dougherty
Journal:  J Neurosci       Date:  2017-12-13       Impact factor: 6.167

6.  ARNT2 Tunes Activity-Dependent Gene Expression through NCoR2-Mediated Repression and NPAS4-Mediated Activation.

Authors:  Nikhil Sharma; Elizabeth A Pollina; M Aurel Nagy; Ee-Lynn Yap; Florence A DiBiase; Sinisa Hrvatin; Linda Hu; Cindy Lin; Michael E Greenberg
Journal:  Neuron       Date:  2019-03-04       Impact factor: 17.173

7.  The Transcriptional Regulator SnoN Promotes the Proliferation of Cerebellar Granule Neuron Precursors in the Postnatal Mouse Brain.

Authors:  Xiaoying Chen; Ayan Chanda; Yoshiho Ikeuchi; Xiaoqing Zhang; Jared V Goodman; Naveen C Reddy; Shahriyar P Majidi; Dennis Y Wu; Sarah E Smith; Abigail Godec; Anna Oldenborg; Harrison W Gabel; Guoyan Zhao; Shirin Bonni; Azad Bonni
Journal:  J Neurosci       Date:  2018-11-13       Impact factor: 6.167

Review 8.  What does the fruitless gene tell us about nature vs. nurture in the sex life of Drosophila?

Authors:  Daisuke Yamamoto; Soh Kohatsu
Journal:  Fly (Austin)       Date:  2016-11-23       Impact factor: 2.160

Review 9.  Activity-Regulated Transcription: Bridging the Gap between Neural Activity and Behavior.

Authors:  Ee-Lynn Yap; Michael E Greenberg
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

10.  Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription of Arc/Arg3.1 and Other Immediate Early Genes.

Authors:  Carissa J Dunn; Pushpita Sarkar; Emma R Bailey; Shannon Farris; Meilan Zhao; James M Ward; Serena M Dudek; Ramendra N Saha
Journal:  eNeuro       Date:  2017-08-24
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