Literature DB >> 28490640

Transcribing the connectome: roles for transcription factors and chromatin regulators in activity-dependent synapse development.

Liang-Fu Chen1, Allen S Zhou1, Anne E West2.   

Abstract

The wiring of synaptic connections in the developing mammalian brain is shaped by both intrinsic and extrinsic signals. One point where these regulatory pathways converge is via the sensory experience-dependent regulation of new gene transcription. Recent studies have elucidated a number of molecular mechanisms that allow nuclear transcription factors and chromatin regulatory proteins to encode aspects of specificity in experience-dependent synapse development. Here we review the evidence for the transcriptional mechanisms that sculpt activity-dependent aspects of synaptic connectivity during postnatal development and discuss how disruption of these processes is associated with aberrant brain development in autism and intellectual disability.
Copyright © 2017 the American Physiological Society.

Entities:  

Keywords:  activity-dependent synaptic plasticity; autism; chromatin; synapse development; transcription

Mesh:

Substances:

Year:  2017        PMID: 28490640      PMCID: PMC5539463          DOI: 10.1152/jn.00067.2017

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  140 in total

1.  The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation.

Authors:  Francois Fuks; Paul J Hurd; Daniel Wolf; Xinsheng Nan; Adrian P Bird; Tony Kouzarides
Journal:  J Biol Chem       Date:  2002-11-09       Impact factor: 5.157

2.  MeCP2 binds to non-CG methylated DNA as neurons mature, influencing transcription and the timing of onset for Rett syndrome.

Authors:  Lin Chen; Kaifu Chen; Laura A Lavery; Steven Andrew Baker; Chad A Shaw; Wei Li; Huda Y Zoghbi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

3.  Dendritic spine pathologies in hippocampal pyramidal neurons from Rett syndrome brain and after expression of Rett-associated MECP2 mutations.

Authors:  Christopher A Chapleau; Gaston D Calfa; Meredith C Lane; Asher J Albertson; Jennifer L Larimore; Shinichi Kudo; Dawna L Armstrong; Alan K Percy; Lucas Pozzo-Miller
Journal:  Neurobiol Dis       Date:  2009-05-12       Impact factor: 5.996

4.  Protein kinase SGK mediates survival signals by phosphorylating the forkhead transcription factor FKHRL1 (FOXO3a).

Authors:  A Brunet; J Park; H Tran; L S Hu; B A Hemmings; M E Greenberg
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy.

Authors:  Christopher E Nelson; Chady H Hakim; David G Ousterout; Pratiksha I Thakore; Eirik A Moreb; Ruth M Castellanos Rivera; Sarina Madhavan; Xiufang Pan; F Ann Ran; Winston X Yan; Aravind Asokan; Feng Zhang; Dongsheng Duan; Charles A Gersbach
Journal:  Science       Date:  2015-12-31       Impact factor: 47.728

6.  Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes.

Authors:  Ken Sugino; Chris M Hempel; Benjamin W Okaty; Hannah A Arnson; Saori Kato; Vardhan S Dani; Sacha B Nelson
Journal:  J Neurosci       Date:  2014-09-17       Impact factor: 6.167

7.  Evolution of Osteocrin as an activity-regulated factor in the primate brain.

Authors:  Bulent Ataman; Gabriella L Boulting; David A Harmin; Marty G Yang; Mollie Baker-Salisbury; Ee-Lynn Yap; Athar N Malik; Kevin Mei; Alex A Rubin; Ivo Spiegel; Ershela Durresi; Nikhil Sharma; Linda S Hu; Mihovil Pletikos; Eric C Griffith; Jennifer N Partlow; Christine R Stevens; Mazhar Adli; Maria Chahrour; Nenad Sestan; Christopher A Walsh; Vladimir K Berezovskii; Margaret S Livingstone; Michael E Greenberg
Journal:  Nature       Date:  2016-11-10       Impact factor: 49.962

8.  GTF2I hemizygosity implicated in mental retardation in Williams syndrome: genotype-phenotype analysis of five families with deletions in the Williams syndrome region.

Authors:  Colleen A Morris; Carolyn B Mervis; Holly H Hobart; Ronald G Gregg; Jacquelyn Bertrand; Gregory J Ensing; Annemarie Sommer; Cynthia A Moore; Robert J Hopkin; Patricia A Spallone; Mark T Keating; Lucy Osborne; Kendra W Kimberley; A Dean Stock
Journal:  Am J Med Genet A       Date:  2003-11-15       Impact factor: 2.802

9.  Identifying autism loci and genes by tracing recent shared ancestry.

Authors:  Eric M Morrow; Seung-Yun Yoo; Steven W Flavell; Tae-Kyung Kim; Yingxi Lin; Robert Sean Hill; Nahit M Mukaddes; Soher Balkhy; Generoso Gascon; Asif Hashmi; Samira Al-Saad; Janice Ware; Robert M Joseph; Rachel Greenblatt; Danielle Gleason; Julia A Ertelt; Kira A Apse; Adria Bodell; Jennifer N Partlow; Brenda Barry; Hui Yao; Kyriacos Markianos; Russell J Ferland; Michael E Greenberg; Christopher A Walsh
Journal:  Science       Date:  2008-07-11       Impact factor: 47.728

10.  Partial reversal of Rett Syndrome-like symptoms in MeCP2 mutant mice.

Authors:  Daniela Tropea; Emanuela Giacometti; Nathan R Wilson; Caroline Beard; Cortina McCurry; Dong Dong Fu; Ruth Flannery; Rudolf Jaenisch; Mriganka Sur
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-10       Impact factor: 11.205

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  11 in total

Review 1.  Chromatin Regulation of Neuronal Maturation and Plasticity.

Authors:  David A Gallegos; Urann Chan; Liang-Fu Chen; Anne E West
Journal:  Trends Neurosci       Date:  2018-03-09       Impact factor: 13.837

2.  Hippocampal stimulation promotes intracellular Tip60 dynamics with concomitant genome reorganization and synaptic gene activation.

Authors:  Ashley Karnay; Bhanu Chandra Karisetty; Mariah Beaver; Felice Elefant
Journal:  Mol Cell Neurosci       Date:  2019-11-01       Impact factor: 4.314

3.  An Activity-Mediated Transition in Transcription in Early Postnatal Neurons.

Authors:  Hume Stroud; Marty G Yang; Yael N Tsitohay; Christopher P Davis; Maxwell A Sherman; Sinisa Hrvatin; Emi Ling; Michael E Greenberg
Journal:  Neuron       Date:  2020-06-25       Impact factor: 17.173

4.  Haploinsufficiency of the Sin3/HDAC corepressor complex member SIN3B causes a syndromic intellectual disability/autism spectrum disorder.

Authors:  Xenia Latypova; Marie Vincent; Alice Mollé; Oluwadamilare A Adebambo; Cynthia Fourgeux; Tahir N Khan; Alfonso Caro; Monica Rosello; Carmen Orellana; Dmitriy Niyazov; Damien Lederer; Marie Deprez; Yline Capri; Peter Kannu; Anne Claude Tabet; Jonathan Levy; Emmelien Aten; Nicolette den Hollander; Miranda Splitt; Jagdeep Walia; Ladonna L Immken; Pawel Stankiewicz; Kirsty McWalter; Sharon Suchy; Raymond J Louie; Shannon Bell; Roger E Stevenson; Justine Rousseau; Catherine Willem; Christelle Retiere; Xiang-Jiao Yang; Philippe M Campeau; Francisco Martinez; Jill A Rosenfeld; Cédric Le Caignec; Sébastien Küry; Sandra Mercier; Kamran Moradkhani; Solène Conrad; Thomas Besnard; Benjamin Cogné; Nicholas Katsanis; Stéphane Bézieau; Jeremie Poschmann; Erica E Davis; Bertrand Isidor
Journal:  Am J Hum Genet       Date:  2021-04-02       Impact factor: 11.025

5.  Mutations of the histone linker H1-4 in neurodevelopmental disorders and functional characterization of neurons expressing C-terminus frameshift mutant H1.4.

Authors:  Martine W Tremblay; Matthew V Green; Benjamin M Goldstein; Andrew I Aldridge; Jill A Rosenfeld; Haley Streff; Wendy D Tan; William Craigen; Nasim Bekheirnia; Saeed Al Tala; Anne E West; Yong-Hui Jiang
Journal:  Hum Mol Genet       Date:  2022-05-04       Impact factor: 5.121

Review 6.  Neurobiological functions of transcriptional enhancers.

Authors:  Alex S Nord; Anne E West
Journal:  Nat Neurosci       Date:  2019-11-18       Impact factor: 24.884

Review 7.  Synapse development organized by neuronal activity-regulated immediate-early genes.

Authors:  Seungjoon Kim; Hyeonho Kim; Ji Won Um
Journal:  Exp Mol Med       Date:  2018-04-09       Impact factor: 8.718

8.  Gene expression profiling of the olfactory tissues of sex-separated and sex-combined female and male mice.

Authors:  Stephen W Santoro; Susanne Jakob
Journal:  Sci Data       Date:  2018-12-04       Impact factor: 6.444

9.  Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes.

Authors:  Liang-Fu Chen; Yen Ting Lin; David A Gallegos; Mariah F Hazlett; Mariana Gómez-Schiavon; Marty G Yang; Breanna Kalmeta; Allen S Zhou; Liad Holtzman; Charles A Gersbach; Jörg Grandl; Nicolas E Buchler; Anne E West
Journal:  Cell Rep       Date:  2019-01-29       Impact factor: 9.423

10.  Mef2 induction of the immediate early gene Hr38/Nr4a is terminated by Sirt1 to promote ethanol tolerance.

Authors:  P Adhikari; D Orozco; H Randhawa; F W Wolf
Journal:  Genes Brain Behav       Date:  2018-05-28       Impact factor: 3.708

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