Literature DB >> 29237735

The Expanding Toolkit of Translating Ribosome Affinity Purification.

Joseph D Dougherty1.   

Abstract

Translating ribosome affinity purification is a method initially developed for profiling mRNA from genetically defined cell types in complex tissues. It has been applied both to identify target molecules in cell types that are important for controlling a variety of behaviors in the brain, and to understand the molecular consequences on those cells due to experimental manipulations, ranging from drugs of abuse to disease-causing mutations. Since its inception, a variety of methodological advances are opening new avenues of investigation. These advances include a variety of new methods for targeting cells for translating ribosome affinity purification by features such as their projections or activity, additional tags and mouse reagents increasing the flexibility of the system, and new modifications of the method specifically focused on studying the regulation of translation. The latter includes methods to assess cell type-specific regulation of translation in specific subcellular compartments. Here, I provide a summary of these recent advances and resources, highlighting both new experimental opportunities and areas for future technical development.
Copyright © 2017 the authors 0270-6474/17/3712079-09$15.00/0.

Entities:  

Keywords:  RNASeq; local translation; ribosome profiling; translating ribosome affinity purification; translation regulation

Mesh:

Substances:

Year:  2017        PMID: 29237735      PMCID: PMC5729187          DOI: 10.1523/JNEUROSCI.1929-17.2017

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  73 in total

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3.  Macrophage Transcriptional Profile Identifies Lipid Catabolic Pathways That Can Be Therapeutically Targeted after Spinal Cord Injury.

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Journal:  J Neurosci       Date:  2017-01-27       Impact factor: 6.167

4.  CGG repeats in RNA modulate expression of TDP-43 in mouse and fly models of fragile X tremor ataxia syndrome.

Authors:  Jocelyn N Galloway; Chad Shaw; Peng Yu; Deena Parghi; Mickael Poidevin; Peng Jin; David L Nelson
Journal:  Hum Mol Genet       Date:  2014-06-30       Impact factor: 6.150

5.  Development of translating ribosome affinity purification for zebrafish.

Authors:  Robert C Tryon; Nilambari Pisat; Stephen L Johnson; Joseph D Dougherty
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Journal:  Front Mol Neurosci       Date:  2017-01-27       Impact factor: 5.639

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  13 in total

Review 1.  The molecular and cellular mechanisms of depression: a focus on reward circuitry.

Authors:  Megan E Fox; Mary Kay Lobo
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2.  Cell-type specific polysome profiling from mammalian tissues.

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Journal:  Methods       Date:  2018-11-27       Impact factor: 3.608

3.  Identification of Genes Enriched in GnRH Neurons by Translating Ribosome Affinity Purification and RNAseq in Mice.

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Journal:  Endocrinology       Date:  2018-04-01       Impact factor: 4.736

4.  Measuring mRNA translation in neuronal processes and somata by tRNA-FRET.

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Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

5.  Dopamine neuron-specific LRRK2 G2019S effects on gene expression revealed by translatome profiling.

Authors:  Judit Pallos; Sophia Jeng; Shannon McWeeney; Ian Martin
Journal:  Neurobiol Dis       Date:  2021-05-11       Impact factor: 5.996

6.  The Differences in Local Translatome across Distinct Neuron Types Is Mediated by Both Baseline Cellular Differences and Post-transcriptional Mechanisms.

Authors:  Rebecca Ouwenga; Allison M Lake; Shivani Aryal; Tomas Lagunas; Joseph D Dougherty
Journal:  eNeuro       Date:  2019-02-04

7.  A Picture Worth a Thousand Molecules-Integrative Technologies for Mapping Subcellular Molecular Organization and Plasticity in Developing Circuits.

Authors:  Jacqueline A Minehart; Colenso M Speer
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8.  Protocol to extract actively translated mRNAs from mouse hypothalamus by translating ribosome affinity purification.

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Journal:  STAR Protoc       Date:  2021-06-09

9.  Translational changes induced by acute sleep deprivation uncovered by TRAP-Seq.

Authors:  Lisa C Lyons; Snehajyoti Chatterjee; Yann Vanrobaeys; Marie E Gaine; Ted Abel
Journal:  Mol Brain       Date:  2020-12-03       Impact factor: 4.399

10.  Loss of Tsc1 in cerebellar Purkinje cells induces transcriptional and translation changes in FMRP target transcripts.

Authors:  Jasbir Singh Dalal; Kellen Diamond Winden; Catherine Lourdes Salussolia; Maria Sundberg; Achint Singh; Truc Thanh Pham; Pingzhu Zhou; William T Pu; Meghan T Miller; Mustafa Sahin
Journal:  Elife       Date:  2021-07-14       Impact factor: 8.140

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