Literature DB >> 27412510

THE DECADE OF THE RABiT (2005-15).

G Garty1, H C Turner2, A Salerno3,4, A Bertucci2, J Zhang3,5, Y Chen3, A Dutta2,6, P Sharma2, D Bian3, M Taveras2, H Wang3,7, A Bhatla3,8, A Balajee2,9, A W Bigelow2, M Repin2, O V Lyulko2, N Simaan3,10, Y L Yao3, D J Brenner2.   

Abstract

The RABiT (Rapid Automated Biodosimetry Tool) is a dedicated Robotic platform for the automation of cytogenetics-based biodosimetry assays. The RABiT was developed to fulfill the critical requirement for triage following a mass radiological or nuclear event. Starting from well-characterized and accepted assays we developed a custom robotic platform to automate them. We present here a brief historical overview of the RABiT program at Columbia University from its inception in 2005 until the RABiT was dismantled at the end of 2015. The main focus of this paper is to demonstrate how the biological assays drove development of the custom robotic systems and in turn new advances in commercial robotic platforms inspired small modifications in the assays to allow replacing customized robotics with 'off the shelf' systems. Currently, a second-generation, RABiT II, system at Columbia University, consisting of a PerkinElmer cell::explorer, was programmed to perform the RABiT assays and is undergoing testing and optimization studies.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Mesh:

Year:  2016        PMID: 27412510      PMCID: PMC5225976          DOI: 10.1093/rpd/ncw172

Source DB:  PubMed          Journal:  Radiat Prot Dosimetry        ISSN: 0144-8420            Impact factor:   0.972


  28 in total

1.  mBAND: a high resolution multicolor banding technique for the detection of complex intrachromosomal aberrations.

Authors:  I Chudoba; G Hickmann; T Friedrich; A Jauch; P Kozlowski; G Senger
Journal:  Cytogenet Genome Res       Date:  2004       Impact factor: 1.636

2.  Stable intrachromosomal biomarkers of past exposure to densely ionizing radiation in several chromosomes of exposed individuals.

Authors:  Catherine R Mitchell; Tamara V Azizova; M Prakash Hande; Ludmilla E Burak; Josephine M Tsakok; Valentin F Khokhryakov; Charles R Geard; David J Brenner
Journal:  Radiat Res       Date:  2004-09       Impact factor: 2.841

Review 3.  Priority list of research areas for radiological nuclear threat countermeasures.

Authors:  Terry C Pellmar; Sara Rockwell
Journal:  Radiat Res       Date:  2005-01       Impact factor: 2.841

4.  Cytogenetic biodosimetry of an accidental exposure of a radiological worker using multiple assays.

Authors:  H Thierens; K De Ruyck; A Vral; V de Gelder; C A Whitehouse; E J Tawn; I Boesman
Journal:  Radiat Prot Dosimetry       Date:  2005-03-29       Impact factor: 0.972

Review 5.  Screening technologies for small molecule discovery: the state of the art.

Authors:  William P Janzen
Journal:  Chem Biol       Date:  2014-09-18

6.  Adapting the γ-H2AX assay for automated processing in human lymphocytes. 1. Technological aspects.

Authors:  Helen C Turner; David J Brenner; Youhua Chen; Antonella Bertucci; Jian Zhang; Hongliang Wang; Oleksandra V Lyulko; Yanping Xu; Igor Shuryak; Julia Schaefer; Nabil Simaan; Gerhard Randers-Pehrson; Y Lawrence Yao; Sally A Amundson; Guy Garty
Journal:  Radiat Res       Date:  2010-12-28       Impact factor: 2.841

7.  The RABIT: a rapid automated biodosimetry tool for radiological triage.

Authors:  Guy Garty; Youhua Chen; Alessio Salerno; Helen Turner; Jian Zhang; Oleksandra Lyulko; Antonella Bertucci; Yanping Xu; Hongliang Wang; Nabil Simaan; Gerhard Randers-Pehrson; Y Lawrence Yao; Sally A Amundson; David J Brenner
Journal:  Health Phys       Date:  2010-02       Impact factor: 1.316

8.  Development of a High-Throughput and Miniaturized Cytokinesis-Block Micronucleus Assay for Use as a Biological Dosimetry Population Triage Tool.

Authors:  Stanley W Lue; Mikhail Repin; Ryan Mahnke; David J Brenner
Journal:  Radiat Res       Date:  2015-07-31       Impact factor: 2.841

9.  Automated Recognition of Robotic Manipulation Failures in High-throughput Biodosimetry Tool.

Authors:  Youhua Chen; Hongliang Wang; Jian Zhang; Guy Garty; Nabil Simaan; Y Lawrence Yao; David J Brenner
Journal:  Expert Syst Appl       Date:  2012-08       Impact factor: 6.954

10.  HUMN project: detailed description of the scoring criteria for the cytokinesis-block micronucleus assay using isolated human lymphocyte cultures.

Authors:  M Fenech; W P Chang; M Kirsch-Volders; N Holland; S Bonassi; E Zeiger
Journal:  Mutat Res       Date:  2003-01-10       Impact factor: 2.433

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  9 in total

Review 1.  Metabolomic applications in radiation biodosimetry: exploring radiation effects through small molecules.

Authors:  Evan L Pannkuk; Albert J Fornace; Evagelia C Laiakis
Journal:  Int J Radiat Biol       Date:  2017-01-12       Impact factor: 2.694

2.  Automated Triage Radiation Biodosimetry: Integrating Imaging Flow Cytometry with High-Throughput Robotics to Perform the Cytokinesis-Block Micronucleus Assay.

Authors:  Qi Wang; Matthew A Rodrigues; Mikhail Repin; Sergey Pampou; Lindsay A Beaton-Green; Jay Perrier; Guy Garty; David J Brenner; Helen C Turner; Ruth C Wilkins
Journal:  Radiat Res       Date:  2019-02-19       Impact factor: 2.841

3.  Gas Chromatography/Mass Spectrometry Metabolomics of Urine and Serum from Nonhuman Primates Exposed to Ionizing Radiation: Impacts on the Tricarboxylic Acid Cycle and Protein Metabolism.

Authors:  Evan L Pannkuk; Evagelia C Laiakis; Simon Authier; Karen Wong; Albert J Fornace
Journal:  J Proteome Res       Date:  2017-04-04       Impact factor: 4.466

4.  RABiT-II: Implementation of a High-Throughput Micronucleus Biodosimetry Assay on Commercial Biotech Robotic Systems.

Authors:  Mikhail Repin; Sergey Pampou; Charles Karan; David J Brenner; Guy Garty
Journal:  Radiat Res       Date:  2017-02-23       Impact factor: 2.841

5.  Dose and Dose-Rate Effects in a Mouse Model of Internal Exposure from 137Cs. Part 2: Integration of Gamma-H2AX and Gene Expression Biomarkers for Retrospective Radiation Biodosimetry.

Authors:  Igor Shuryak; Shanaz A Ghandhi; Helen C Turner; Waylon Weber; Dunstana Melo; Sally A Amundson; David J Brenner
Journal:  Radiat Res       Date:  2020-11-01       Impact factor: 2.841

6.  Plasma levels of serum amyloid A1 and mortality after exposure to high-dose radiation.

Authors:  Dmitry Klokov
Journal:  Ann Transl Med       Date:  2020-06

7.  Effect of dose and dose rate on temporal γ-H2AX kinetics in mouse blood and spleen mononuclear cells in vivo following Cesium-137 administration.

Authors:  Helen C Turner; Younghyun Lee; Waylon Weber; Dunstana Melo; Aimee Kowell; Shanaz A Ghandhi; Sally A Amundson; David J Brenner; Igor Shuryak
Journal:  BMC Mol Cell Biol       Date:  2019-05-28

8.  Cytogenetically-based biodosimetry after high doses of radiation.

Authors:  Monica Pujol-Canadell; Jay R Perrier; Lidia Cunha; Igor Shuryak; Andrew Harken; Guy Garty; David J Brenner
Journal:  PLoS One       Date:  2020-04-22       Impact factor: 3.240

9.  The use of a centrifuge-free RABiT-II system for high-throughput micronucleus analysis.

Authors:  Mikhail Repin; Sergey Pampou; David J Brenner; Guy Garty
Journal:  J Radiat Res       Date:  2020-01-23       Impact factor: 2.724

  9 in total

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