Literature DB >> 27404877

Software tools for single-cell tracking and quantification of cellular and molecular properties.

Oliver Hilsenbeck1,2,3, Michael Schwarzfischer3, Stavroula Skylaki1, Bernhard Schauberger2, Philipp S Hoppe1,2, Dirk Loeffler1,2, Konstantinos D Kokkaliaris1,2, Simon Hastreiter1,2, Eleni Skylaki1, Adam Filipczyk2, Michael Strasser3, Felix Buggenthin3, Justin S Feigelman3, Jan Krumsiek3, Adrianus J J van den Berg2, Max Endele1,2, Martin Etzrodt1, Carsten Marr3, Fabian J Theis3,4, Timm Schroeder1,2.   

Abstract

Mesh：

Year:  2016        PMID： 27404877     DOI： 10.1038/nbt.3626

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  26 in total

1.  Generation of optimized yellow and red fluorescent proteins with distinct subcellular localization.

Authors:  Chiga Okita; Masae Sato; Timm Schroeder
Journal:  Biotechniques       Date:  2004-03       Impact factor: 1.993

2.  TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.

Authors:  Johannes Klein; Stefan Leupold; Ilona Biegler; Rebekka Biedendieck; Richard Münch; Dieter Jahn
Journal:  Bioinformatics       Date:  2012-07-05       Impact factor: 6.937

3.  A call for bioimaging software usability.

Authors:  Anne E Carpenter; Lee Kamentsky; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

4.  Biallelic expression of nanog protein in mouse embryonic stem cells.

Authors:  Adam Filipczyk; Konstantinos Gkatzis; Jun Fu; Philipp S Hoppe; Heiko Lickert; Konstantinos Anastassiadis; Timm Schroeder
Journal:  Cell Stem Cell       Date:  2013-07-03       Impact factor: 24.633

5.  TimeLapseAnalyzer: multi-target analysis for live-cell imaging and time-lapse microscopy.

Authors:  Johannes Huth; Malte Buchholz; Johann M Kraus; Kristian Mølhave; Cristian Gradinaru; Götz v Wichert; Thomas M Gress; Heiko Neumann; Hans A Kestler
Journal:  Comput Methods Programs Biomed       Date:  2011-06-25       Impact factor: 5.428

Review 6.  Long-term single-cell imaging of mammalian stem cells.

Authors:  Timm Schroeder
Journal:  Nat Methods       Date:  2011-03-30       Impact factor: 28.547

7.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

8.  Oligodendrogliogenic and neurogenic adult subependymal zone neural stem cells constitute distinct lineages and exhibit differential responsiveness to Wnt signalling.

Authors:  Felipe Ortega; Sergio Gascón; Giacomo Masserdotti; Aditi Deshpande; Christiane Simon; Judith Fischer; Leda Dimou; D Chichung Lie; Timm Schroeder; Benedikt Berninger
Journal:  Nat Cell Biol       Date:  2013-05-05       Impact factor: 28.824

9.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583
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  51 in total

1.  CSF-1-induced Src signaling can instruct monocytic lineage choice.

Authors:  Max Endele; Dirk Loeffler; Konstantinos D Kokkaliaris; Oliver Hilsenbeck; Stavroula Skylaki; Philipp S Hoppe; Axel Schambach; E Richard Stanley; Timm Schroeder
Journal:  Blood       Date:  2017-02-03       Impact factor: 22.113

Review 2.  Estimation methods for heterogeneous cell population models in systems biology.

Authors:  Steffen Waldherr
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

Review 3.  Challenges in long-term imaging and quantification of single-cell dynamics.

Authors:  Stavroula Skylaki; Oliver Hilsenbeck; Timm Schroeder
Journal:  Nat Biotechnol       Date:  2016-11-08       Impact factor: 54.908

4.  Cell Tracking Profiler - a user-driven analysis framework for evaluating 4D live-cell imaging data.

Authors:  Claire Mitchell; Lauryanne Caroff; Jose Alonso Solis-Lemus; Constantino Carlos Reyes-Aldasoro; Alessandra Vigilante; Fiona Warburton; Fabrice de Chaumont; Alexandre Dufour; Stephane Dallongeville; Jean-Christophe Olivo-Marin; Robert Knight
Journal:  J Cell Sci       Date:  2020-11-23       Impact factor: 5.285

5.  Live Imaging of Primary Cerebral Cortex Cells Using a 2D Culture System.

Authors:  Bruna Soares Landeira; Jéssica Alves de Medeiros Araújo; Timm Schroeder; Ulrich Müller; Marcos R Costa
Journal:  J Vis Exp       Date:  2017-08-09       Impact factor: 1.355

6.  Single-Cell Quantification of Protein Degradation Rates by Time-Lapse Fluorescence Microscopy in Adherent Cell Culture.

Authors:  Andrea Brigitta Alber; David Michael Suter
Journal:  J Vis Exp       Date:  2018-02-04       Impact factor: 1.355

7.  Long-term Live-cell Imaging to Assess Cell Fate in Response to Paclitaxel.

Authors:  Amanda F Bolgioni; Marc A Vittoria; Neil J Ganem
Journal:  J Vis Exp       Date:  2018-05-14       Impact factor: 1.355

Review 8.  Recent Advances in the Analysis of Single Cells.

Authors:  Lucas Armbrecht; Petra S Dittrich
Journal:  Anal Chem       Date:  2016-12-07       Impact factor: 6.986

9.  Inflammasome Regulates Hematopoiesis through Cleavage of the Master Erythroid Transcription Factor GATA1.

Authors:  Sylwia D Tyrkalska; Ana B Pérez-Oliva; Lola Rodríguez-Ruiz; Francisco J Martínez-Morcillo; Francisca Alcaraz-Pérez; Francisco J Martínez-Navarro; Christophe Lachaud; Nouraiz Ahmed; Timm Schroeder; Irene Pardo-Sánchez; Sergio Candel; Azucena López-Muñoz; Avik Choudhuri; Marlies P Rossmann; Leonard I Zon; María L Cayuela; Diana García-Moreno; Victoriano Mulero
Journal:  Immunity       Date:  2019-06-04       Impact factor: 31.745

10.  Direct In Vitro Reprogramming of Astrocytes into Induced Neurons.

Authors:  Nesrin Sharif; Filippo Calzolari; Benedikt Berninger
Journal:  Methods Mol Biol       Date:  2021
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