Literature DB >> 27400232

Biochemical and synthetic biology approaches to improve photosynthetic CO2-fixation.

Tobias J Erb1, Jan Zarzycki2.   

Abstract

There is an urgent need to improve agricultural productivity to secure future food and biofuel supply. Here, we summarize current approaches that aim at improving photosynthetic CO2-fixation. We critically review, compare and comment on the four major lines of research towards this aim, which focus on (i) improving RubisCO, the CO2-fixing enzyme in photosynthesis, (ii) implementing CO2-concentrating mechanisms, (iii) establishing synthetic photorespiration bypasses, and (iv) engineering synthetic CO2-fixation pathways.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 27400232      PMCID: PMC7610755          DOI: 10.1016/j.cbpa.2016.06.026

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  58 in total

Review 1.  Functions, compositions, and evolution of the two types of carboxysomes: polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria.

Authors:  Benjamin D Rae; Benedict M Long; Murray R Badger; G Dean Price
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

Review 2.  Lessons from engineering a single-cell C(4) photosynthetic pathway into rice.

Authors:  Mitsue Miyao; Chisato Masumoto; Shin-Ichi Miyazawa; Hiroshi Fukayama
Journal:  J Exp Bot       Date:  2011-03-31       Impact factor: 6.992

3.  Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana.

Authors:  Rashad Kebeish; Markus Niessen; Krishnaveni Thiruveedhi; Rafijul Bari; Heinz-Josef Hirsch; Ruben Rosenkranz; Norma Stäbler; Barbara Schönfeld; Fritz Kreuzaler; Christoph Peterhänsel
Journal:  Nat Biotechnol       Date:  2007-04-15       Impact factor: 54.908

Review 4.  Ecological aspects of the distribution of different autotrophic CO2 fixation pathways.

Authors:  Ivan A Berg
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

5.  A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Authors:  Hiroki Ashida; Yohtaro Saito; Chojiro Kojima; Kazuo Kobayashi; Naotake Ogasawara; Akiho Yokota
Journal:  Science       Date:  2003-10-10       Impact factor: 47.728

6.  Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria.

Authors:  Vanessa A Varaljay; Sriram Satagopan; Justin A North; Brian Witte; Manuella N Dourado; Karthik Anantharaman; Mark A Arbing; Shelley Hoeft McCann; Ronald S Oremland; Jillian F Banfield; Kelly C Wrighton; F Robert Tabita
Journal:  Environ Microbiol       Date:  2016-01-21       Impact factor: 5.491

7.  Artificially evolved Synechococcus PCC6301 Rubisco variants exhibit improvements in folding and catalytic efficiency.

Authors:  Dina N Greene; Spencer M Whitney; Ichiro Matsumura
Journal:  Biochem J       Date:  2007-06-15       Impact factor: 3.857

8.  RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.

Authors:  Hiroki Ashida; Yohtaro Saito; Toshihiro Nakano; Nicole Tandeau de Marsac; Agnieszka Sekowska; Antoine Danchin; Akiho Yokota
Journal:  J Exp Bot       Date:  2008-04-09       Impact factor: 6.992

Review 9.  The evolution of inorganic carbon concentrating mechanisms in photosynthesis.

Authors:  John A Raven; Charles S Cockell; Christina L De La Rocha
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-08-27       Impact factor: 6.237

10.  Towards engineering carboxysomes into C3 plants.

Authors:  Maureen R Hanson; Myat T Lin; A Elizabete Carmo-Silva; Martin A J Parry
Journal:  Plant J       Date:  2016-06-20       Impact factor: 6.417

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  22 in total

Review 1.  Synthetic metabolism: metabolic engineering meets enzyme design.

Authors:  Tobias J Erb; Patrik R Jones; Arren Bar-Even
Journal:  Curr Opin Chem Biol       Date:  2017-01-30       Impact factor: 8.822

2.  Rewiring Escherichia coli for carbon-dioxide fixation.

Authors:  Cheryl A Kerfeld
Journal:  Nat Biotechnol       Date:  2016-10-11       Impact factor: 54.908

Review 3.  Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss.

Authors:  Jeffrey S Amthor; Arren Bar-Even; Andrew D Hanson; A Harvey Millar; Mark Stitt; Lee J Sweetlove; Stephen D Tyerman
Journal:  Plant Cell       Date:  2019-01-22       Impact factor: 11.277

Review 4.  Metabolic engineering strategies to enable microbial utilization of C1 feedstocks.

Authors:  Wei Jiang; David Hernández Villamor; Huadong Peng; Jian Chen; Long Liu; Victoria Haritos; Rodrigo Ledesma-Amaro
Journal:  Nat Chem Biol       Date:  2021-07-26       Impact factor: 15.040

5.  Hybrid Cyanobacterial-Tobacco Rubisco Supports Autotrophic Growth and Procarboxysomal Aggregation.

Authors:  Douglas J Orr; Dawn Worrall; Myat T Lin; Elizabete Carmo-Silva; Maureen R Hanson; Martin A J Parry
Journal:  Plant Physiol       Date:  2019-11-19       Impact factor: 8.340

6.  Molecular basis for the assembly of RuBisCO assisted by the chaperone Raf1.

Authors:  Ling-Yun Xia; Yong-Liang Jiang; Wen-Wen Kong; Hui Sun; Wei-Fang Li; Yuxing Chen; Cong-Zhao Zhou
Journal:  Nat Plants       Date:  2020-05-25       Impact factor: 15.793

7.  Dissecting the individual contribution of conserved cysteines to the redox regulation of RubisCO.

Authors:  María Jesús García-Murria; Hemanth P K Sudhani; Julia Marín-Navarro; Manuel M Sánchez Del Pino; Joaquín Moreno
Journal:  Photosynth Res       Date:  2018-03-10       Impact factor: 3.573

8.  A Synthetic Oxygen Sensor for Plants Based on Animal Hypoxia Signaling.

Authors:  Sergio Iacopino; Sandro Jurinovich; Lorenzo Cupellini; Luca Piccinini; Francesco Cardarelli; Pierdomenico Perata; Benedetta Mennucci; Beatrice Giuntoli; Francesco Licausi
Journal:  Plant Physiol       Date:  2018-11-20       Impact factor: 8.340

Review 9.  From chaperonins to Rubisco assembly and metabolic repair.

Authors:  Manajit Hayer-Hartl
Journal:  Protein Sci       Date:  2017-10-10       Impact factor: 6.725

10.  A synthetic pathway for the fixation of carbon dioxide in vitro.

Authors:  Thomas Schwander; Lennart Schada von Borzyskowski; Simon Burgener; Niña Socorro Cortina; Tobias J Erb
Journal:  Science       Date:  2016-11-18       Impact factor: 47.728

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