Literature DB >> 18403380

RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.

Hiroki Ashida1, Yohtaro Saito, Toshihiro Nakano, Nicole Tandeau de Marsac, Agnieszka Sekowska, Antoine Danchin, Akiho Yokota.   

Abstract

Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is the key enzyme in the fixation of CO(2) in the Calvin cycle of plants. Many genome projects have revealed that bacteria, including Bacillus subtilis, possess genes for proteins that are similar to the large subunit of RuBisCO. These RuBisCO homologues are called RuBisCO-like proteins (RLPs) because they are not able to catalyse the carboxylase or the oxygenase reactions that are catalysed by photosynthetic RuBisCO. It has been demonstrated that B. subtilis RLP catalyses the 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) enolase reaction in the methionine salvage pathway. The structure of DK-MTP-1-P is very similar to that of ribulose-1,5-bisphosphate (RuBP) and the enolase reaction is a part of the reaction catalysed by photosynthetic RuBisCO. In this review, functional and evolutionary relationships between B. subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO are discussed. In addition, the fundamental question, 'How has RuBisCO evolved?' is also considered, and evidence is presented that RuBisCOs evolved from RLPs.

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Year:  2008        PMID: 18403380     DOI: 10.1093/jxb/ern104

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  18 in total

Review 1.  Autotrophic carbon fixation in archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; W Hugo Ramos-Vera; Rafael F Say; Jan Zarzycki; Michael Hügler; Birgit E Alber; Georg Fuchs
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

2.  Mechanistic diversity in the RuBisCO superfamily: RuBisCO from Rhodospirillum rubrum is not promiscuous for reactions catalyzed by RuBisCO-like proteins.

Authors:  Benjamin P E Warlick; Heidi J Imker; Jaya Sriram; F Robert Tabita; John A Gerlt
Journal:  Biochemistry       Date:  2012-11-14       Impact factor: 3.162

Review 3.  Biochemical and synthetic biology approaches to improve photosynthetic CO2-fixation.

Authors:  Tobias J Erb; Jan Zarzycki
Journal:  Curr Opin Chem Biol       Date:  2016-07-09       Impact factor: 8.822

4.  Draft genome sequence of Herbaspirillum lusitanum P6-12, an endophyte isolated from root nodules of Phaseolus vulgaris.

Authors:  Vinícius Almir Weiss; Helisson Faoro; Michelle Zibbetti Tadra-Sfeir; Roberto Tadeu Raittz; Emanuel Maltempi de Souza; Rose Adele Monteiro; Rodrigo Luis Alves Cardoso; Roseli Wassem; Leda Satie Chubatsu; Luciano Fernandes Huergo; Marcelo Müller-Santos; Maria Berenice Reynaud Steffens; Liu Un Rigo; Fábio de Oliveira Pedrosa; Leonardo Magalhães Cruz
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

Review 5.  A short history of RubisCO: the rise and fall (?) of Nature's predominant CO2 fixing enzyme.

Authors:  Tobias J Erb; Jan Zarzycki
Journal:  Curr Opin Biotechnol       Date:  2017-08-29       Impact factor: 9.740

6.  Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota.

Authors:  Yang Liu; Zhichao Zhou; Jie Pan; Brett J Baker; Ji-Dong Gu; Meng Li
Journal:  ISME J       Date:  2018-02-14       Impact factor: 10.302

7.  Comparative protein profiles of Butea superba tubers under seasonal changes.

Authors:  Chonchanok Leelahawong; Chantragan Srisomsap; Wichai Cherdshewasart; Daranee Chokchaichamnankit; Nawaporn Vinayavekhin; Polkit Sangvanich
Journal:  Mol Biol Rep       Date:  2016-05-19       Impact factor: 2.316

8.  Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO.

Authors:  Yohtaro Saito; Hiroki Ashida; Tomoko Sakiyama; Nicole Tandeau de Marsac; Antoine Danchin; Agnieszka Sekowska; Akiho Yokota
Journal:  J Biol Chem       Date:  2009-03-11       Impact factor: 5.157

9.  Structural mechanism of RuBisCO activation by carbamylation of the active site lysine.

Authors:  Boguslaw Stec
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

10.  Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India.

Authors:  Basit Yousuf; Payal Sanadhya; Jitendra Keshri; Bhavanath Jha
Journal:  BMC Microbiol       Date:  2012-07-26       Impact factor: 3.605

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