| Literature DB >> 27398062 |
Demetrio L Valle1, Phyllis Anne P Paclibare2, Esperanza C Cabrera3, Windell L Rivera2.
Abstract
BACKGROUND: Methicillin-resistant Staphylococcus aureus (MRSA) poses a major threat to public health worldwide. There are relatively few studies addressing the molecular epidemiology of MRSA in the Philippines.Entities:
Keywords: Methicillin-resistant S. aureus (MRSA); Panton-Valentine leukocidin (PVL); Philippines; Phylogram; Random amplified polymorphic DNA (RAPD); SCCmec; Staphylococcus aureus
Year: 2016 PMID: 27398062 PMCID: PMC4934148 DOI: 10.1186/s41182-016-0003-z
Source DB: PubMed Journal: Trop Med Health ISSN: 1348-8945
Primers for the detection of mecA, lukF-lukS, and 16S rDNA for Staphylococcus aureus
| Primer | Nucleotide sequence (5′ to 3′) | Product size (bp) |
|---|---|---|
| Staph 756F | AACTCTGTTATTAGGGAAGAACA | 756 |
| Staph 750R | CCAACCTTCCTCCGGTTTGTCACC | |
| Luk-PV-1 | ATCATTAGGTAAAATGTCTGGACATGATCCA | 433 |
| Luk-PV-2 | GCATCAAGTGTATTGGATAGCAAAAGC | |
| MecA1 | GTAGAAATGACTGAACGTCCGATAA | 310 |
| MecA2 | CCAATTCCACATTGTTTCGGTCTAA |
Primers for the determination of SCCmec type of MRSA isolates
| Primer | Nucleotide sequence (5′ to 3′) | Product size (bp) | SCC |
|---|---|---|---|
| CIF2 F2 | TTCGAGTTGCTGATGAAGAAGG | 495 | I, IA |
| CIF2 R2 | ATTTACCACAATTACTACCAGC | ||
| KDP F1 | AATCATCTGCCATTGGTGATGC | 284 | II |
| KDP R1 | CGAATGAAGTGAAAGAAAGTGG | ||
| DCS F2 | CATCCTATGATAGCTTGGTC | 342 | I, IA, II, IV, IVA |
| DCS R2 | CTAAATCATAGCCATGACCG | ||
| RIF4 F3 | GTGATTGTTCGAGATATGTGG | 243 | III |
| RIF4 R9 | CGCTTTATCTGTATCTATCGC | ||
| IS431 P4 | CAGGTCTCTTCAGATCTACG | 381 | IA, II, IVA |
| PUB110 R1 | GAGCCATAAACACCAATAGCC | ||
| MECA P4 | TCCAGATTACAACTTCACCAGG | 162 |
|
| MECA P7 | CCACTTCATATCTTGTAACG |
Antimicrobial susceptibility profile of MRSA isolates
| Antimicrobial | Susceptible | Intermediate | Resistant |
|---|---|---|---|
| Penicillin | 0 | 0 | 108 (100 %) |
| Oxacillin | 0 | 0 | 108 (100 %) |
| Cefoxitin | 0 | 0 | 108 (100 %) |
| Ciprofloxacin | 100 (92.59 %) | 4 (3.70 %) | 4 (3.7 %) |
| Levofloxacin | 99 (91.67 %) | 9 (8.33 %) | 0 |
| Clindamycin | 99 (91.67 %) | 6 (5.56 %) | 3 (2.78 %) |
| Erythromycin | 102 (94.44 %) | 3 (2.78 %) | 3 (2.78 %) |
| Gentamicin | 102 (94.44 %) | 0 | 6 (5.56 %) |
| Minocycline | 108 (100 %) | 0 | 0 |
| Tetracycline | 108 (100 %) | 0 | 0 |
| Vancomycin | 108 (100 %) | 0 | 0 |
| Azithromycin | 86 (79.63) | 11 (10.19 %) | 11 (10.19 %) |
| Nitrofurantoin | 54 (50.00 %) | 54 (50.00 %) | 0 |
| TMP-SXT | 82 (75.93 %) | 4 (3.70 %) | 22 (20.37 %) |
| Rifampin | 108 (100 %) | 0 | 0 |
| Linezolid | 103 (95.37 %) | 0 | 5 (4.63 %) |
Carriage of the PVL genes lukF-lukS among MRSA isolates
| Clinical sample | Outpatient | Inpatient | Total |
|---|---|---|---|
| Wound, wound discharge, abscess | 22 (91.6 %) | 11 (64.7 %) | 33 (80.4 %) |
| Respiratory tract | 1 (4.2 %) | 1 (5.9 %) | 2 (4.9 %) |
| Blood, bile | 1 (4.2 %) | 3 (17.6 %) | 4 (9.8 %) |
| Eye, mouth, ear discharge | 0 | 2 (11.8 %) | 2 (4.9 %) |
| Total | 24 (58.5 %) | 17 (41.5 %) | 41 |
Fig. 1Prevalence of SCCmec types at the Makati Medical Center from January to June 2013. Isolation type 1 denotes samples isolated from outpatients while 2 is samples isolated from inpatients. I, II, III, and IV mean SCCmec types I, II, III, and IV, respectively
Fig. 2Phylogram of genetic relationships between 108 isolates of S. aureus by RAPD