Literature DB >> 8971615

RAPD typing in microbiology--a technical review.

E G Power1.   

Abstract

Many biochemical and molecular techniques can be used for distinguishing isolates of a given bacterial species. Traditional typing techniques based on phenotypic characteristics such as serotyping are being increasingly challenged by the use of DNA-based methods. The introduction of the polymerase chain reaction (PCR) has led to typing techniques based on DNA amplification. Randomly amplified polymorphic DNA (RAPD) typing (also known as arbitrarily primed-polymerase chain reaction, APPCR) is one such technique which is being used increasingly to type micro-organisms, especially during clinical outbreaks. The application and potential problems and solutions of RAPD typing are discussed and the role of such techniques among established typing methods is addressed.

Mesh:

Year:  1996        PMID: 8971615     DOI: 10.1016/s0195-6701(96)90106-1

Source DB:  PubMed          Journal:  J Hosp Infect        ISSN: 0195-6701            Impact factor:   3.926


  46 in total

1.  Evaluation of fluorescence-based amplified fragment length polymorphism analysis for molecular typing in hospital epidemiology: comparison with pulsed-field gel electrophoresis for typing strains of vancomycin-resistant Enterococcus faecium.

Authors:  N A Antonishyn; R R McDonald; E L Chan; G Horsman; C E Woodmansee; P S Falk; C G Mayhall
Journal:  J Clin Microbiol       Date:  2000-11       Impact factor: 5.948

Review 2.  Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology.

Authors:  A van Belkum; M Struelens; A de Visser; H Verbrugh; M Tibayrenc
Journal:  Clin Microbiol Rev       Date:  2001-07       Impact factor: 26.132

3.  Characterization of Scedosporium prolificans clinical isolates by randomly amplified polymorphic DNA analysis.

Authors:  R San Millán; G Quindós; J Garaizar; R Salesa; J Guarro; J Pontón
Journal:  J Clin Microbiol       Date:  1997-09       Impact factor: 5.948

Review 4.  Methodologies for the characterization of microbes in industrial environments: a review.

Authors:  Johanna Maukonen; Jaana Mättö; Gun Wirtanen; Laura Raaska; Tiina Mattila-Sandholm; Maria Saarela
Journal:  J Ind Microbiol Biotechnol       Date:  2003-05-23       Impact factor: 3.346

5.  Accurate identification of Candida parapsilosis (sensu lato) by use of mitochondrial DNA and real-time PCR.

Authors:  Ana Carolina R Souza; Renata C Ferreira; Sarah S Gonçalves; Guillermo Quindós; Elena Eraso; Fernando C Bizerra; Marcelo R S Briones; Arnaldo L Colombo
Journal:  J Clin Microbiol       Date:  2012-04-25       Impact factor: 5.948

6.  A simple and rapid method for preparing genomic DNA from gram-positive bacteria.

Authors:  M Sohail
Journal:  Mol Biotechnol       Date:  1998-10       Impact factor: 2.695

7.  Analysis of an outbreak of non-phage-typeable methicillin-resistant Staphylococcus aureus by using a randomly amplified polymorphic DNA assay.

Authors:  A Tambic; E G Power; H Talsania; R M Anthony; G L French
Journal:  J Clin Microbiol       Date:  1997-12       Impact factor: 5.948

8.  Amplification-based DNA fingerprinting: from artifactual to definitive typing and in between.

Authors:  A van Belkum
Journal:  J Clin Microbiol       Date:  1997-11       Impact factor: 5.948

9.  Application of an optimized and highly discriminatory method based on arbitrarily primed PCR for epidemiologic analysis of methicillin-resistant Staphylococcus aureus nosocomial infections.

Authors:  A Olmos; J J Camarena; J M Nogueira; J C Navarro; J Risen; R Sánchez
Journal:  J Clin Microbiol       Date:  1998-04       Impact factor: 5.948

10.  Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III.

Authors:  Tom Coenye; Theodore Spilker; Alissa Martin; John J LiPuma
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

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