| Literature DB >> 33005664 |
Alona T Badua1,2, Sukolrat Boonyayatra1, Nattakarn Awaiwanont1, Paula Blanca V Gaban3, Claro N Mingala3,2.
Abstract
OBJECTIVE: Mastitis is considered as an economically important disease of dairy buffaloes in Asia. This study examined the mastitis milk and nasal swab samples for the detection and genotyping of methicillin-resistant Staphylococcus aureus (MRSA) in water buffaloes.Entities:
Keywords: MRSA; SCCmec; ST type; mecA; spa type; water buffaloes
Year: 2020 PMID: 33005664 PMCID: PMC7521815 DOI: 10.5455/javar.2020.g434
Source DB: PubMed Journal: J Adv Vet Anim Res ISSN: 2311-7710
Figure 1.PCR amplification of nuc and mecA genes. Lanes1–3 are composite samples, lanes 4–5 are nasal swab samples, lane 6 is the control (ATCC 43300), and M is the marker (100 bp).
Antibiotics used for the antibiotic susceptibility test.
| Antibiotic discs | Concentration |
|---|---|
| Penicillin G | 10 IU |
| Cefoxitin | 30 μg |
| Clindamycin | 2 μg |
| Rifampicin | 5 μg |
| Sulfamethoxazole/trimethoprim | 23.75/1.25 μg |
| Tetracycline | 30 μg |
| Erythromycin | 15 μg |
| Chloramphenicol | 30 μg |
| Ciprofloxacin | 5 μg |
| Gentamycin | 10 μg |
Primers used in the study.
| Primer | Oligonucleotide sequence (5’-3’) | Amplicon size (bp) | Specificity | Reference |
|---|---|---|---|---|
| Multiplex PCR | ||||
| nuc-1 | GCG ATT GAT GGT GAT ACG GTT | 279 |
|
[ |
| nuc-2 | AGC CAA GCC TTG ACG AAC TAA AGC | |||
|
| GTG AAG ATA TAC CAA GTG ATT | 147 |
|
[ |
|
| ATG CGC TAT AGA TTG AAA GGA T | |||
|
SC | ||||
| Type I-F | GCT TTA AAG AGT GTC GTT ACA GG | 613 |
|
[ |
| Type I-R | GTT CTC TCA TAG TAT GAC GTC C | |||
| Type II-F | CGT TGA AGA TGA TGA AGC G | 398 |
|
[ |
| Type II-R | CGA AAT CAA TGG TTA ATG GAC C | |||
| Type III-F | CCA TAT TGT GTA CGA TGC G | 280 |
|
[ |
| Type III-R | CCT TAG TTG TCG TAA CAG ATC G | |||
| Type IVa-F | GCC TTA TTC GAA GAA ACC G | 776 |
|
[ |
| Type IVa-R | CTA CTC TTC TGA AAA GCG TCG | |||
| Type IVb-F | TCT GGA ATT ACT TCA GCT GC | 493 |
|
[ |
| Type IVb-R | AAA CAA TAT TGC TCT CCC TC | |||
| Type IVc-F2 | CCT GAA TCT AAA GAG ATA CAC CG | 200 |
|
[ |
| Type IVc-R2 | GGT TAT TTT CAT AGT GAA TCG C | |||
| Type IVd-F5 | CTC AAA ATA CGG ACC CCA ATA CA | 881 |
|
[ |
| Type IVd-R6 | TGC TCC AGT AAT TGC TAA AG | |||
| Type V-F | GAA CAT TGT TAC TTA AAT GAG CG | 325 |
|
[ |
| Type V-R | TGA AAG TTG TAC CCT TGA CAC C | |||
|
| ||||
| 1095F | AGA CGA TCC TTC GGT GAG C | Varied |
|
[ |
| 1517R | GCT TTT GCA ATG TCA TTT ACT G | |||
| MLST typing | ||||
|
| TTG ATT CAC CAG CGC GTA TTG TC | 456 | Carbamate kinase |
[ |
|
| AGG TAT CTG CTT CAA TCA GCG | |||
|
| ATC GGA AAT CCT ATT TCA CAT TC | 456 | Shikimate dehydrogenase |
[ |
|
| GGT GTT GTA TTA ATA ACG ATA TC | |||
|
| CTA GGA ACT GCA ATC TTA ATC C | 465 | Glycerol kinase |
[ |
|
| TGG TAA AAT CGC ATG TCC AAT TC | |||
|
| ATC GTT TTA TCG GGA CCA TC | 429 | Guanylate kinase |
[ |
|
| TCA TTA ACT ACA ACG TAA TCG TA | |||
|
| GTT AAA ATC GTA TTA CCT GAA GG | 474 | Phosphate acetyltransferase |
[ |
|
| GAC CCT TTT GTT GAA AAG CTT AA | |||
|
| TCG TTCA TTC TGA ACG TCG TGA A | 402 | Triosephosphate isomerase |
[ |
|
| TTT GCA CCT TCT AAC AAT TGT AC | |||
|
| CAG CAT ACA GGA CAC CTA TTG GC | 516 | Acetyl coenzyme A acetyltransferase |
[ |
|
| CGT TGA GGA ATC GAT ACT GGA AC | |||
Figure 2.PCR results for the detection of spa gene in milk and nasal swab samples. Lanes 1–5 are composite milk samples, lanes 5–6 are nasal swab samples, and M is the marker (100 bp).
Antimicrobial resistance and genotypes of MRSA from milk and nasal swab samples.
| Sample ID | Source | Antibiotic resistance |
|
|
| ST type |
|---|---|---|---|---|---|---|
| CM1 | Milk | PG-CX | Type IVc | 08-16-02-16-02-25-17-24 | t019 | ST30 |
| CM17 | Milk | PG-CX-CD-TC | Type IVc | 15-16-02-25-17-24-24 | t1642 | ST5992 |
| CM21 | Milk | PG-CX | Non-typeable | 26-23-13-21-17-34-33-34 | t657 | ST1148 |
| CM23 | Milk | PG-CX | Type II | 08-16-02-16-34-13-17-34-16-34 | t015 | ST508 |
| CM25 | Milk | PG-CX | Type IVc | 26-23-17-34-20-17-12-17-16 | t311 | ST5 |
| CM26 | Milk | PG-CX-CD | Type IVc | 08-16-02-25-17-24 | t138 | ST5991 |
| CM32 | Milk | PG-CX | Type IVc | 11-10-21-17-34-24-34-22-25-25 | t701 | ST1649 |
| CM34 | Milk | PG-CX-CD | Non-typeable | 07-23-02-34 | t1939 | ST12 |
| CM35 | Milk | PG-CX | Type IVc | 11-10-21-17-34-24-34-22-25-25 | t701 | ST1649 |
| NS24 | Nasal Swab | PG-CX-CD | Non-typeable | 07-23-21-17-34-12-23-02-12-23 | t091 | ST2454 |
| NS30 | Nasal Swab | PG-CX-CD | Non-typeable | 07-16-12-23-02-12-23-02-34 | t800 | ST9 |
| NS31 | Nasal Swab | PG-CX-CD | Type I | 07-16-12-23-02-12-23-02-34 | t800 | ST9 |
PG = Penicillin; CX = Cefoxitin; CD = Clindamycin; TC = Tetracycline.
MLST allelic profile and ST of MRSA isolates.
| Sample ID | Type of Sample |
|
|
|
|
|
|
| ST |
|---|---|---|---|---|---|---|---|---|---|
| CM1 | Composite Milk | 2 | 2 | 2 | 2 | 6 | 3 | 2 | ST30 |
| CM17 | Composite Milk | 18 | 18 | 6 | 59 | 13 | 3 | 2 | ST5992 |
| CM21 | Composite Milk | 1 | 61 | 1 | 8 | 12 | 4 | 10 | ST1148 |
| CM23 | Composite Milk | 10 | 40 | 8 | 6 | 10 | 3 | 2 | ST508 |
| CM25 | Composite Milk | 1 | 4 | 1 | 4 | 12 | 1 | 10 | ST5 |
| CM26 | Composite Milk | 2 | 2 | 2 | 2 | 6 | 287 | 2 | ST5991 |
| CM32 | Composite Milk | 12 | 4 | 1 | 4 | 12 | 1 | 67 | ST1649 |
| CM34 | Composite Milk | 1 | 3 | 1 | 8 | 11 | 5 | 11 | ST12 |
| CM35 | Composite Milk | 12 | 4 | 1 | 4 | 12 | 1 | 67 | ST1649 |
| NS24 | Nasal Swab | 3 | 3 | 1 | 1 | 264 | 1 | 10 | ST2454 |
| NS30 | Nasal Swab | 3 | 3 | 1 | 1 | 1 | 1 | 10 | ST9 |
| NS31 | Nasal Swab | 3 | 3 | 1 | 1 | 1 | 1 | 10 | ST9 |
Figure 3.Phylogenetic tree of spa sequences of milk and nasal samples using neighbor-joining method; red-colored accession numbers were considered outgroup in the analysis.