Literature DB >> 27375922

Addressing Benefits, Risks and Consent in Next Generation Sequencing Studies.

R Meller1.   

Abstract

The sequencing of the human genome and technological advances in DNA sequencing have led to a revolution with respect to DNA sequencing and its potential to diagnose genetic disorders. However, requests for open access to genomic data must be balanced against the guiding principles of the Common Rule for human subject research. Unfortunately, the risks to patients involved in genomic studies are still evolving and as such may not be clear to learned and well-intentioned scientists. Central to this issue are the strategies that enable human participants in such studies to remain anonymous, or de-identified. The wealth of genomic data on the Internet in genomic data repositories and other databases has enabled de-identified data to be broken and research subjects to be identified. The security of de-identification neglects the fact that DNA itself is an identifying element. Therefore, it is questionable whether data security standards can ever truly protect the identity of a patient, under the current conditions or in the future. As Big Data methodologies advance, additional sources of data may enable the re-identification of patients enrolled in next-generation sequencing (NGS) studies. As such, it is time to re-evaluate the risks of sharing genomic data and establish new guidelines for good practices. In this commentary, I address the challenges facing federally funded investigators who need to strike a balance between compliance with federal (US) rules for human subjects and the recent requirement for open access/sharing of data from National Institute for Health (NIH)-funded studies involving human subjects.

Entities:  

Keywords:  Consent; Generation sequencing; Human subject research

Year:  2015        PMID: 27375922      PMCID: PMC4930149          DOI: 10.4172/2155-9627.1000249

Source DB:  PubMed          Journal:  J Clin Res Bioeth


  25 in total

1.  Consent to 'personal' genomics and privacy. Direct-to-consumer genetic tests and population genome research challenge traditional notions of privacy and consent.

Authors:  Bartha Maria Knoppers
Journal:  EMBO Rep       Date:  2010-05-07       Impact factor: 8.807

Review 2.  Genomics in newborn screening.

Authors:  Yuval E Landau; Uta Lichter-Konecki; Harvey L Levy
Journal:  J Pediatr       Date:  2013-08-27       Impact factor: 4.406

Review 3.  From genetic privacy to open consent.

Authors:  Jeantine E Lunshof; Ruth Chadwick; Daniel B Vorhaus; George M Church
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

4.  The health benefits of genomics: out with the old, in with the new.

Authors:  Kathy Hudson
Journal:  Health Aff (Millwood)       Date:  2008 Nov-Dec       Impact factor: 6.301

5.  The genomic and transcriptomic landscape of a HeLa cell line.

Authors:  Jonathan J M Landry; Paul Theodor Pyl; Tobias Rausch; Thomas Zichner; Manu M Tekkedil; Adrian M Stütz; Anna Jauch; Raeka S Aiyar; Gregoire Pau; Nicolas Delhomme; Julien Gagneur; Jan O Korbel; Wolfgang Huber; Lars M Steinmetz
Journal:  G3 (Bethesda)       Date:  2013-08-07       Impact factor: 3.154

6.  Perspectives on human microbiome research ethics.

Authors:  Amy L McGuire; Laura S Achenbaum; Simon N Whitney; Melody J Slashinski; James Versalovic; Wendy A Keitel; Sheryl A McCurdy
Journal:  J Empir Res Hum Res Ethics       Date:  2012-07       Impact factor: 1.742

7.  Towards a Next-Generation Sequencing Diagnostic Service for Tumour Genotyping: A Comparison of Panels and Platforms.

Authors:  George J Burghel; Carolyn D Hurst; Christopher M Watson; Phillip A Chambers; Helen Dickinson; Paul Roberts; Margaret A Knowles
Journal:  Biomed Res Int       Date:  2015-08-17       Impact factor: 3.411

8.  Intracerebral Hemorrhage and Ischemic Stroke of Different Etiologies Have Distinct Alternatively Spliced mRNA Profiles in the Blood: a Pilot RNA-seq Study.

Authors:  Cheryl Dykstra-Aiello; Glen C Jickling; Bradley P Ander; Xinhua Zhan; DaZhi Liu; Heather Hull; Miles Orantia; Carolyn Ho; Boryana Stamova
Journal:  Transl Stroke Res       Date:  2015-05-22       Impact factor: 6.829

9.  Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.

Authors:  Nils Homer; Szabolcs Szelinger; Margot Redman; David Duggan; Waibhav Tembe; Jill Muehling; John V Pearson; Dietrich A Stephan; Stanley F Nelson; David W Craig
Journal:  PLoS Genet       Date:  2008-08-29       Impact factor: 5.917

10.  Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis.

Authors:  Hilary C Martin; Grace E Kim; Alistair T Pagnamenta; Yoshiko Murakami; Gemma L Carvill; Esther Meyer; Richard R Copley; Andrew Rimmer; Giulia Barcia; Matthew R Fleming; Jack Kronengold; Maile R Brown; Karl A Hudspith; John Broxholme; Alexander Kanapin; Jean-Baptiste Cazier; Taroh Kinoshita; Rima Nabbout; David Bentley; Gil McVean; Sinéad Heavin; Zenobia Zaiwalla; Tony McShane; Heather C Mefford; Deborah Shears; Helen Stewart; Manju A Kurian; Ingrid E Scheffer; Edward Blair; Peter Donnelly; Leonard K Kaczmarek; Jenny C Taylor
Journal:  Hum Mol Genet       Date:  2014-01-25       Impact factor: 6.150

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  3 in total

1.  Ethical Considerations in Microbial Therapeutic Clinical Trials.

Authors:  Michael H Woodworth; Kaitlin L Sitchenko; Cynthia Carpentieri; Rachel J Friedman-Moraco; Tiffany Wang; Colleen S Kraft
Journal:  New Bioeth       Date:  2017-10-17

2.  Privacy and ethical challenges in next-generation sequencing.

Authors:  Nicole Martinez-Martin; David Magnus
Journal:  Expert Rev Precis Med Drug Dev       Date:  2019-04-08

3.  User-focused data sharing agreements: a foundation for the genomic future.

Authors:  Carolyn Petersen
Journal:  JAMIA Open       Date:  2019-10-01
  3 in total

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