Literature DB >> 27372352

Go in! Go out! Inducible control of nuclear localization.

Barbara Di Ventura1, Brian Kuhlman2.   

Abstract

Cells have evolved a variety of mechanisms to regulate the enormous complexity of processes taking place inside them. One mechanism consists in tightly controlling the localization of macromolecules, keeping them away from their place of action until needed. Since a large fraction of the cellular response to external stimuli is mediated by gene expression, it is not surprising that transcriptional regulators are often subject to stimulus-induced nuclear import or export. Here we review recent methods in chemical biology and optogenetics for controlling the nuclear localization of proteins of interest inside living cells. These methods allow researchers to regulate protein activity with exquisite spatiotemporal control, and open up new possibilities for studying the roles of proteins in a broad array of cellular processes and biological functions.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27372352      PMCID: PMC5107339          DOI: 10.1016/j.cbpa.2016.06.009

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  104 in total

1.  Synthesis of phycocyanobilin in mammalian cells.

Authors:  Konrad Müller; Raphael Engesser; Jens Timmer; Ferenc Nagy; Matias D Zurbriggen; Wilfried Weber
Journal:  Chem Commun (Camb)       Date:  2013-10-11       Impact factor: 6.222

2.  The crystal structure of the IkappaBalpha/NF-kappaB complex reveals mechanisms of NF-kappaB inactivation.

Authors:  T Huxford; D B Huang; S Malek; G Ghosh
Journal:  Cell       Date:  1998-12-11       Impact factor: 41.582

3.  Structure of an IkappaBalpha/NF-kappaB complex.

Authors:  M D Jacobs; S C Harrison
Journal:  Cell       Date:  1998-12-11       Impact factor: 41.582

4.  Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction.

Authors:  S Crosson; K Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

5.  Signal-induced site-specific phosphorylation targets I kappa B alpha to the ubiquitin-proteasome pathway.

Authors:  Z Chen; J Hagler; V J Palombella; F Melandri; D Scherer; D Ballard; T Maniatis
Journal:  Genes Dev       Date:  1995-07-01       Impact factor: 11.361

6.  A transcription factor with SH2 and SH3 domains is directly activated by an interferon alpha-induced cytoplasmic protein tyrosine kinase(s).

Authors:  X Y Fu
Journal:  Cell       Date:  1992-07-24       Impact factor: 41.582

7.  HDAC4 deacetylase associates with and represses the MEF2 transcription factor.

Authors:  E A Miska; C Karlsson; E Langley; S J Nielsen; J Pines; T Kouzarides
Journal:  EMBO J       Date:  1999-09-15       Impact factor: 11.598

8.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

9.  Ligand-activated site-specific recombination in mice.

Authors:  R Feil; J Brocard; B Mascrez; M LeMeur; D Metzger; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

10.  Control of protein function through optochemical translocation.

Authors:  Hanna Engelke; Chungjung Chou; Rajendra Uprety; Phillip Jess; Alexander Deiters
Journal:  ACS Synth Biol       Date:  2014-02-26       Impact factor: 5.110

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  23 in total

1.  Engineering Improved Photoswitches for the Control of Nucleocytoplasmic Distribution.

Authors:  Andrew M Lerner; Hayretin Yumerefendi; Odessa J Goudy; Brian D Strahl; Brian Kuhlman
Journal:  ACS Synth Biol       Date:  2018-11-29       Impact factor: 5.110

2.  OSBP-related protein 4L promotes phospholipase Cβ3 translocation from the nucleus to the plasma membrane in Jurkat T-cells.

Authors:  Guoping Pan; Xiuye Cao; Bo Liu; Chaowen Li; Dan Li; Jie Zheng; Chaofeng Lai; Vesa M Olkkonen; Wenbin Zhong; Daoguang Yan
Journal:  J Biol Chem       Date:  2018-09-20       Impact factor: 5.157

3.  Comparison of RNA Editing Activity of APOBEC1-A1CF and APOBEC1-RBM47 Complexes Reconstituted in HEK293T Cells.

Authors:  Aaron D Wolfe; Don B Arnold; Xiaojiang S Chen
Journal:  J Mol Biol       Date:  2019-03-04       Impact factor: 5.469

Review 4.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

5.  Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1.

Authors:  Julia S Kirpich; L Tyler Mix; Shelley S Martin; Nathan C Rockwell; J Clark Lagarias; Delmar S Larsen
Journal:  J Phys Chem Lett       Date:  2018-06-11       Impact factor: 6.475

6.  Light-Dependent Cytoplasmic Recruitment Enhances the Dynamic Range of a Nuclear Import Photoswitch.

Authors:  Hayretin Yumerefendi; Hui Wang; Daniel J Dickinson; Andrew M Lerner; Per Malkus; Bob Goldstein; Klaus Hahn; Brian Kuhlman
Journal:  Chembiochem       Date:  2018-04-06       Impact factor: 3.164

7.  Engineering Optogenetic Protein Analogs.

Authors:  Bei Liu; Daniel J Marston; Klaus M Hahn
Journal:  Methods Mol Biol       Date:  2020

8.  A simple optogenetic MAPK inhibitor design reveals resonance between transcription-regulating circuitry and temporally-encoded inputs.

Authors:  Raquel M Melero-Fernandez de Mera; Li-Li Li; Arkadiusz Popinigis; Katryna Cisek; Minna Tuittila; Leena Yadav; Andrius Serva; Michael J Courtney
Journal:  Nat Commun       Date:  2017-05-12       Impact factor: 14.919

Review 9.  How to Train a Cell-Cutting-Edge Molecular Tools.

Authors:  Jakub Czapiński; Michał Kiełbus; Joanna Kałafut; Michał Kos; Andrzej Stepulak; Adolfo Rivero-Müller
Journal:  Front Chem       Date:  2017-03-10       Impact factor: 5.221

10.  Depletion of nuclear import protein karyopherin alpha 7 (KPNA7) induces mitotic defects and deformation of nuclei in cancer cells.

Authors:  Elisa M Vuorinen; Nina K Rajala; Teemu O Ihalainen; Anne Kallioniemi
Journal:  BMC Cancer       Date:  2018-03-27       Impact factor: 4.430

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