Literature DB >> 29446199

Light-Dependent Cytoplasmic Recruitment Enhances the Dynamic Range of a Nuclear Import Photoswitch.

Hayretin Yumerefendi1, Hui Wang2, Daniel J Dickinson3,4, Andrew M Lerner1, Per Malkus1,5, Bob Goldstein3, Klaus Hahn2, Brian Kuhlman1.   

Abstract

Cellular signal transduction is often regulated at multiple steps to achieve more complex logic or precise control of a pathway. For instance, some signaling mechanisms couple allosteric activation with localization to achieve high signal to noise. Here, we create a system for light-activated nuclear import that incorporates two levels of control. It consists of a nuclear import photoswitch, light-activated nuclear shuttle (LANS), and a protein engineered to preferentially interact with LANS in the dark, Zdk2. First, Zdk2 is tethered to a location in the cytoplasm that sequesters LANS in the dark. Second, LANS incorporates a nuclear localization signal (NLS) that is sterically blocked from binding to the nuclear import machinery in the dark. If activated with light, LANS both dissociates from its tethered location and exposes its NLS, which leads to nuclear accumulation. We demonstrate that this coupled system improves the dynamic range of LANS in mammalian cells, yeast, and Caenorhabditis elegans and provides tighter control of transcription factors that have been fused to LANS.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  light-activated nuclear shuttles; optogenetics; photoswitches; protein engineering; signal transduction

Mesh:

Substances:

Year:  2018        PMID: 29446199      PMCID: PMC6013380          DOI: 10.1002/cbic.201700681

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  29 in total

1.  Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity.

Authors:  Shannon M Harper; John M Christie; Kevin H Gardner
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

2.  Engineering and Application of LOV2-Based Photoswitches.

Authors:  S P Zimmerman; B Kuhlman; H Yumerefendi
Journal:  Methods Enzymol       Date:  2016-07-01       Impact factor: 1.600

3.  A genetic pathway for the specification of the vulval cell lineages of Caenorhabditis elegans.

Authors:  E L Ferguson; P W Sternberg; H R Horvitz
Journal:  Nature       Date:  1987 Mar 19-25       Impact factor: 49.962

4.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

5.  Gain-of-function mutations in the Caenorhabditis elegans lin-1 ETS gene identify a C-terminal regulatory domain phosphorylated by ERK MAP kinase.

Authors:  D Jacobs; G J Beitel; S G Clark; H R Horvitz; K Kornfeld
Journal:  Genetics       Date:  1998-08       Impact factor: 4.562

6.  Vma21p is a yeast membrane protein retained in the endoplasmic reticulum by a di-lysine motif and is required for the assembly of the vacuolar H(+)-ATPase complex.

Authors:  K J Hill; T H Stevens
Journal:  Mol Biol Cell       Date:  1994-09       Impact factor: 4.138

7.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

8.  Control of Protein Activity and Cell Fate Specification via Light-Mediated Nuclear Translocation.

Authors:  Hayretin Yumerefendi; Daniel J Dickinson; Hui Wang; Seth P Zimmerman; James E Bear; Bob Goldstein; Klaus Hahn; Brian Kuhlman
Journal:  PLoS One       Date:  2015-06-17       Impact factor: 3.240

9.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells.

Authors:  Dominik Niopek; Dirk Benzinger; Julia Roensch; Thomas Draebing; Pierre Wehler; Roland Eils; Barbara Di Ventura
Journal:  Nat Commun       Date:  2014-07-14       Impact factor: 14.919

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  7 in total

1.  Engineering Improved Photoswitches for the Control of Nucleocytoplasmic Distribution.

Authors:  Andrew M Lerner; Hayretin Yumerefendi; Odessa J Goudy; Brian D Strahl; Brian Kuhlman
Journal:  ACS Synth Biol       Date:  2018-11-29       Impact factor: 5.110

Review 2.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

3.  Engineering Optogenetic Protein Analogs.

Authors:  Bei Liu; Daniel J Marston; Klaus M Hahn
Journal:  Methods Mol Biol       Date:  2020

4.  Optogenetic Control Reveals Differential Promoter Interpretation of Transcription Factor Nuclear Translocation Dynamics.

Authors:  Susan Y Chen; Lindsey C Osimiri; Michael Chevalier; Lukasz J Bugaj; Taylor H Nguyen; R A Greenstein; Andrew H Ng; Jacob Stewart-Ornstein; Lauren T Neves; Hana El-Samad
Journal:  Cell Syst       Date:  2020-09-07       Impact factor: 10.304

Review 5.  Dual Systems for Enhancing Control of Protein Activity through Induced Dimerization Approaches.

Authors:  Sarah Pearce; Chandra L Tucker
Journal:  Adv Biol (Weinh)       Date:  2021-01-14

6.  Achieving tight control of a photoactivatable Cre recombinase gene switch: new design strategies and functional characterization in mammalian cells and rodent.

Authors:  Kyle Meador; Christina L Wysoczynski; Aaron J Norris; Jason Aoto; Michael R Bruchas; Chandra L Tucker
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

7.  Optogenetic regulation of endogenous proteins.

Authors:  Taras A Redchuk; Maksim M Karasev; Polina V Verkhusha; Sara K Donnelly; Maren Hülsemann; Jori Virtanen; Henna M Moore; Maria K Vartiainen; Louis Hodgson; Vladislav V Verkhusha
Journal:  Nat Commun       Date:  2020-01-30       Impact factor: 14.919

  7 in total

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