Literature DB >> 27348189

Formate Assimilation: The Metabolic Architecture of Natural and Synthetic Pathways.

Arren Bar-Even1.   

Abstract

Formate may become an ideal mediator between the physicochemical and biological realms, as it can be produced efficiently from multiple available sources, such as electricity and biomass, and serve as one of the simplest organic compounds for providing both carbon and energy to living cells. However, limiting the realization of formate as a microbial feedstock is the low diversity of formate-fixing enzymes and thereby the small number of naturally occurring formate-assimilation pathways. Here, the natural enzymes and pathways supporting formate assimilation are presented and discussed together with proposed synthetic routes that could permit growth on formate via existing as well as novel formate-fixing reactions. By considering such synthetic routes, the diversity of metabolic solutions for formate assimilation can be expanded dramatically, such that different host organisms, cultivation conditions, and desired products could be matched with the most suitable pathway. Astute application of old and new formate-assimilation pathways may thus become a cornerstone in the development of sustainable strategies for microbial production of value-added chemicals.

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Year:  2016        PMID: 27348189     DOI: 10.1021/acs.biochem.6b00495

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

Review 1.  Synthetic metabolism: metabolic engineering meets enzyme design.

Authors:  Tobias J Erb; Patrik R Jones; Arren Bar-Even
Journal:  Curr Opin Chem Biol       Date:  2017-01-30       Impact factor: 8.822

2.  Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway.

Authors:  Israel A Figueroa; Tyler P Barnum; Pranav Y Somasekhar; Charlotte I Carlström; Anna L Engelbrektson; John D Coates
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-28       Impact factor: 11.205

Review 3.  Harnessing the power of microbial autotrophy.

Authors:  Nico J Claassens; Diana Z Sousa; Vitor A P Martins Dos Santos; Willem M de Vos; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2016-09-26       Impact factor: 60.633

Review 4.  A critical comparison of cellular and cell-free bioproduction systems.

Authors:  Nico J Claassens; Simon Burgener; Bastian Vögeli; Tobias J Erb; Arren Bar-Even
Journal:  Curr Opin Biotechnol       Date:  2019-06-14       Impact factor: 9.740

5.  Biosynthesis Based on One-Carbon Mixotrophy.

Authors:  Yaeseong Hong; An-Ping Zeng
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

6.  Engineering the Reductive Glycine Pathway: A Promising Synthetic Metabolism Approach for C1-Assimilation.

Authors:  Nico J Claassens; Ari Satanowski; Viswanada R Bysani; Beau Dronsella; Enrico Orsi; Vittorio Rainaldi; Suzan Yilmaz; Sebastian Wenk; Steffen N Lindner
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

Review 7.  Synthetic methylotrophic yeasts for the sustainable fuel and chemical production.

Authors:  Vanessa Wegat; Jonathan T Fabarius; Volker Sieber
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-10-22

8.  Assimilation of formic acid and CO2 by engineered Escherichia coli equipped with reconstructed one-carbon assimilation pathways.

Authors:  Junho Bang; Sang Yup Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-17       Impact factor: 11.205

9.  The diversity and evolution of microbial dissimilatory phosphite oxidation.

Authors:  Sophia D Ewens; Alexa F S Gomberg; Tyler P Barnum; Mikayla A Borton; Hans K Carlson; Kelly C Wrighton; John D Coates
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 12.779

10.  Exploring eukaryotic formate metabolisms to enhance microbial growth and lipid accumulation.

Authors:  Zhiguo Liu; Tolutola Oyetunde; Whitney D Hollinshead; Anna Hermanns; Yinjie J Tang; Wei Liao; Yan Liu
Journal:  Biotechnol Biofuels       Date:  2017-01-26       Impact factor: 6.040

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