Literature DB >> 27345945

Effects of 3D geometries on cellular gradient sensing and polarization.

Fabian Spill1, Vivi Andasari, Michael Mak, Roger D Kamm, Muhammad H Zaman.   

Abstract

During cell migration, cells become polarized, change their shape, and move in response to various internal and external cues. Cell polarization is defined through the spatio-temporal organization of molecules such as PI3K or small GTPases, and is determined by intracellular signaling networks. It results in directional forces through actin polymerization and myosin contractions. Many existing mathematical models of cell polarization are formulated in terms of reaction-diffusion systems of interacting molecules, and are often defined in one or two spatial dimensions. In this paper, we introduce a 3D reaction-diffusion model of interacting molecules in a single cell, and find that cell geometry has an important role affecting the capability of a cell to polarize, or change polarization when an external signal changes direction. Our results suggest a geometrical argument why more roundish cells can repolarize more effectively than cells which are elongated along the direction of the original stimulus, and thus enable roundish cells to turn faster, as has been observed in experiments. On the other hand, elongated cells preferentially polarize along their main axis even when a gradient stimulus appears from another direction. Furthermore, our 3D model can accurately capture the effect of binding and unbinding of important regulators of cell polarization to and from the cell membrane. This spatial separation of membrane and cytosol, not possible to capture in 1D or 2D models, leads to marked differences of our model from comparable lower-dimensional models.

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Year:  2016        PMID: 27345945      PMCID: PMC4963243          DOI: 10.1088/1478-3975/13/3/036008

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  65 in total

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Review 2.  Chemotaxis: signalling the way forward.

Authors:  Peter J M Van Haastert; Peter N Devreotes
Journal:  Nat Rev Mol Cell Biol       Date:  2004-08       Impact factor: 94.444

3.  In vivo dynamics of Rac-membrane interactions.

Authors:  Konstadinos Moissoglu; Boris M Slepchenko; Nahum Meller; Alan F Horwitz; Martin A Schwartz
Journal:  Mol Biol Cell       Date:  2006-04-05       Impact factor: 4.138

4.  Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk.

Authors:  Alexandra Jilkine; Athanasius F M Marée; Leah Edelstein-Keshet
Journal:  Bull Math Biol       Date:  2007-04-25       Impact factor: 1.758

5.  Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell.

Authors:  Adriana T Dawes; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

6.  Differing modes of tumour cell invasion have distinct requirements for Rho/ROCK signalling and extracellular proteolysis.

Authors:  Erik Sahai; Christopher J Marshall
Journal:  Nat Cell Biol       Date:  2003-08       Impact factor: 28.824

Review 7.  Changing directions in the study of chemotaxis.

Authors:  Robert R Kay; Paul Langridge; David Traynor; Oliver Hoeller
Journal:  Nat Rev Mol Cell Biol       Date:  2008-06       Impact factor: 94.444

Review 8.  A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues.

Authors:  Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2011-04-28       Impact factor: 4.475

9.  How cells integrate complex stimuli: the effect of feedback from phosphoinositides and cell shape on cell polarization and motility.

Authors:  Athanasius F M Marée; Verônica A Grieneisen; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2012-03-01       Impact factor: 4.475

10.  Platelet-derived growth factor in chemotactic for fibroblasts.

Authors:  H Seppä; G Grotendorst; S Seppä; E Schiffmann; G R Martin
Journal:  J Cell Biol       Date:  1982-02       Impact factor: 10.539

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  11 in total

Review 1.  Single-Cell Migration in Complex Microenvironments: Mechanics and Signaling Dynamics.

Authors:  Michael Mak; Fabian Spill; Roger D Kamm; Muhammad H Zaman
Journal:  J Biomech Eng       Date:  2016-02       Impact factor: 2.097

Review 2.  Modeling, signaling and cytoskeleton dynamics: integrated modeling-experimental frameworks in cell migration.

Authors:  Meng Sun; Muhammad H Zaman
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2016-11-15

3.  Sensing the shape of a cell with reaction diffusion and energy minimization.

Authors:  Amit R Singh; Travis Leadbetter; Brian A Camley
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-29       Impact factor: 12.779

4.  Exploring the influence of cytosolic and membrane FAK activation on YAP/TAZ nuclear translocation.

Authors:  Kerbaï Saïd Eroumé; Rachel Cavill; Katerina Staňková; Jan de Boer; Aurélie Carlier
Journal:  Biophys J       Date:  2021-09-10       Impact factor: 3.699

5.  The effect of cell geometry on polarization in budding yeast.

Authors:  Michael Trogdon; Brian Drawert; Carlos Gomez; Samhita P Banavar; Tau-Mu Yi; Otger Campàs; Linda R Petzold
Journal:  PLoS Comput Biol       Date:  2018-06-11       Impact factor: 4.475

6.  On the influence of cell shape on dynamic reaction-diffusion polarization patterns.

Authors:  K Eroumé; A Vasilevich; S Vermeulen; J de Boer; A Carlier
Journal:  PLoS One       Date:  2021-03-18       Impact factor: 3.240

Review 7.  Modern perspectives on near-equilibrium analysis of Turing systems.

Authors:  Andrew L Krause; Eamonn A Gaffney; Philip K Maini; Václav Klika
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-11-08       Impact factor: 4.226

Review 8.  Pancreatic Ductal Adenocarcinoma Cortical Mechanics and Clinical Implications.

Authors:  Shantel Angstadt; Qingfeng Zhu; Elizabeth M Jaffee; Douglas N Robinson; Robert A Anders
Journal:  Front Oncol       Date:  2022-01-31       Impact factor: 5.738

Review 9.  Mechanical and Systems Biology of Cancer.

Authors:  Fabian Spill; Chris Bakal; Michael Mak
Journal:  Comput Struct Biotechnol J       Date:  2018-07-17       Impact factor: 7.271

10.  Turing Patterning in Stratified Domains.

Authors:  Andrew L Krause; Václav Klika; Jacob Halatek; Paul K Grant; Thomas E Woolley; Neil Dalchau; Eamonn A Gaffney
Journal:  Bull Math Biol       Date:  2020-10-15       Impact factor: 1.758

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