Literature DB >> 27863122

Modeling, signaling and cytoskeleton dynamics: integrated modeling-experimental frameworks in cell migration.

Meng Sun1, Muhammad H Zaman1,2.   

Abstract

Cell migration is a complex and multistep process involved in homeostasis maintenance, morphogenesis, and disease development, such as cancer metastasis. Modeling cell migration and the relevant cytoskeleton dynamics have profound implications for studying fundamental development and disease diagnosis. This review focuses on some recent models of both cell migration and migration-related cytoskeleton dynamics, addressing issues such as the difference between amoeboid and mesenchymal migration modes, and between single-cell migration and collective cell migration. The review also highlights the computational integration among variable external cues, especially the biochemical and mechanical signaling that affects cell migration. Finally, we aim to identify the gaps in our current knowledge and potential strategies to develop integrated modeling-experimental frameworks for multiscale behavior integrating gene expression, cell signaling, mechanics, and multicellular dynamics. WIREs Syst Biol Med 2017, 9:e1365. doi: 10.1002/wsbm.1365 For further resources related to this article, please visit the WIREs website.
© 2016 Wiley Periodicals, Inc.

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Year:  2016        PMID: 27863122      PMCID: PMC5338640          DOI: 10.1002/wsbm.1365

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  98 in total

Review 1.  Rho and Rac take center stage.

Authors:  Keith Burridge; Krister Wennerberg
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

Review 2.  Regulation of integrin-mediated cellular responses through assembly of a CAS/Crk scaffold.

Authors:  David Chodniewicz; Richard L Klemke
Journal:  Biochim Biophys Acta       Date:  2004-07-05

3.  Long-range force transmission in fibrous matrices enabled by tension-driven alignment of fibers.

Authors:  Hailong Wang; A S Abhilash; Christopher S Chen; Rebecca G Wells; Vivek B Shenoy
Journal:  Biophys J       Date:  2014-12-02       Impact factor: 4.033

4.  Nascent adhesions: from fluctuations to a hierarchical organization.

Authors:  Zhiqi Sun; Armin Lambacher; Reinhard Fässler
Journal:  Curr Biol       Date:  2014-09-08       Impact factor: 10.834

Review 5.  Paxillin comes of age.

Authors:  Nicholas O Deakin; Christopher E Turner
Journal:  J Cell Sci       Date:  2008-08-01       Impact factor: 5.285

6.  The mouse Formin mDia1 is a potent actin nucleation factor regulated by autoinhibition.

Authors:  Fang Li; Henry N Higgs
Journal:  Curr Biol       Date:  2003-08-05       Impact factor: 10.834

7.  Cancer cell migration: integrated roles of matrix mechanics and transforming potential.

Authors:  Erin L Baker; Jaya Srivastava; Dihua Yu; Roger T Bonnecaze; Muhammad H Zaman
Journal:  PLoS One       Date:  2011-05-27       Impact factor: 3.240

8.  Rac downregulates Rho activity: reciprocal balance between both GTPases determines cellular morphology and migratory behavior.

Authors:  E E Sander; J P ten Klooster; S van Delft; R A van der Kammen; J G Collard
Journal:  J Cell Biol       Date:  1999-11-29       Impact factor: 10.539

9.  Impact of dimensionality and network disruption on microrheology of cancer cells in 3D environments.

Authors:  Michael Mak; Roger D Kamm; Muhammad H Zaman
Journal:  PLoS Comput Biol       Date:  2014-11-20       Impact factor: 4.475

10.  Modeling persistence in mesenchymal cell motility using explicit fibers.

Authors:  David Lepzelter; Muhammad H Zaman
Journal:  Langmuir       Date:  2014-05-06       Impact factor: 3.882

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  13 in total

1.  Are the Effects of Independent Biophysical Factors Linearly Additive? A 3D Tumor Migration Model.

Authors:  Ang Li; Meng Sun; Fabian Spill; Ren Sun; Muhammad H Zaman
Journal:  Biophys J       Date:  2019-10-02       Impact factor: 4.033

Review 2.  Unravelling cell migration: defining movement from the cell surface.

Authors:  Francisco Merino-Casallo; Maria Jose Gomez-Benito; Silvia Hervas-Raluy; Jose Manuel Garcia-Aznar
Journal:  Cell Adh Migr       Date:  2022-12       Impact factor: 3.255

3.  Integrated in silico and 3D in vitro model of macrophage migration in response to physical and chemical factors in the tumor microenvironment.

Authors:  Sharon Wei Ling Lee; R J Seager; Felix Litvak; Fabian Spill; Je Lin Sieow; Penny Hweixian Leong; Dillip Kumar; Alrina Shin Min Tan; Siew Cheng Wong; Giulia Adriani; Muhammad Hamid Zaman; And Roger D Kamm
Journal:  Integr Biol (Camb)       Date:  2020-04-20       Impact factor: 2.192

4.  Hyaluronic acid induces ROCK-dependent amoeboid migration in glioblastoma cells.

Authors:  Yixiao Cui; Sara Cole; Joel Pepper; José Javier Otero; Jessica O Winter
Journal:  Biomater Sci       Date:  2020-08-04       Impact factor: 6.843

5.  The knocking down of the oncoprotein Golgi phosphoprotein 3 in T98G cells of glioblastoma multiforme disrupts cell migration by affecting focal adhesion dynamics in a focal adhesion kinase-dependent manner.

Authors:  Cecilia Arriagada; Charlotte Luchsinger; Alexis E González; Tomás Schwenke; Gloria Arriagada; Hugo Folch; Pamela Ehrenfeld; Patricia V Burgos; Gonzalo A Mardones
Journal:  PLoS One       Date:  2019-02-19       Impact factor: 3.240

Review 6.  Computational modeling of single-cell mechanics and cytoskeletal mechanobiology.

Authors:  Vijay Rajagopal; William R Holmes; Peter Vee Sin Lee
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-11-30

Review 7.  Integrins in T Cell Physiology.

Authors:  Alessandra Bertoni; Oscar Alabiso; Alessandra Silvia Galetto; Gianluca Baldanzi
Journal:  Int J Mol Sci       Date:  2018-02-06       Impact factor: 5.923

8.  A 5-Gene Stemness Score for Rapid Determination of Risk in Multiple Myeloma.

Authors:  Hua Bai; Bing Chen
Journal:  Onco Targets Ther       Date:  2020-05-18       Impact factor: 4.147

9.  Integration of in vitro and in silico Models Using Bayesian Optimization With an Application to Stochastic Modeling of Mesenchymal 3D Cell Migration.

Authors:  Francisco Merino-Casallo; Maria J Gomez-Benito; Yago Juste-Lanas; Ruben Martinez-Cantin; Jose M Garcia-Aznar
Journal:  Front Physiol       Date:  2018-09-11       Impact factor: 4.566

10.  From energy to cellular forces in the Cellular Potts Model: An algorithmic approach.

Authors:  Elisabeth G Rens; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2019-12-11       Impact factor: 4.475

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